New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2947467	61 (0.370)	3 (0.030)	3/296	12.0	7.0%	intergenic (+4/‑30)	metZ/metW	tRNA‑Met/tRNA‑Met
	?	NC_000913	2947688 =	41 (0.390)					intergenic (+5/+69)	metV/amiC	tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase C
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCTCTTCTTCAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAG  >  NC_000913/2947181‑2947621                                                                                                                                                                                                                                                                                                 |                                                                                                                                                           ttCTCTTCTTCAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACACAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTatt                                                                                                                                                          >  2:1612680/1‑287 (MQ=255)   ctctTCTTCAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATACGG‑CCCCCGCAACCAATTAatat                                                                                                                                                        >  1:623611/1‑289 (MQ=255)      ttcttcAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCCATTAAAATTtg                                                                                                                                                     >  1:861220/1‑289 (MQ=255)      ttcttcAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGAATAGTGCGCATCCACGGTCGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtg                                                                                                                                                     >  1:269599/1‑289 (MQ=255)       tcttcAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    <  1:1188340/289‑1 (MQ=255)       tcttcAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    <  1:1485758/289‑1 (MQ=255)         ttcAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    <  2:1002617/287‑1 (MQ=255)         ttcAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    >  1:1002617/1‑287 (MQ=255)              attAAAAAAAAAGGCGCAACGAAGATAACAACTCGCCTCGTTAAATGAAATGAGCAGCCTGTCCCTG‑ACGCAAAGTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTa                                                                                                                                             <  2:269599/288‑1 (MQ=255)               ttAAAAAATAAGTGGAACCAAAGATAACAAACCGCCGCGGTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTACACAAAAAATAGGCTTTAGTGATTTGTTTTTGATCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTaa                                                                                                                                            <  2:861220/289‑1 (MQ=255)               ttAAAAAATAAGGCGCAACAGAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAg                                                                                                                                               <  1:1240955/286‑1 (MQ=255)                   aaaaTAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCa                                                                                                                                        <  1:1212992/289‑1 (MQ=255)                                        caCAAACCGCCGCGTTTAAAGAAAGGAGCAGCCTCTCCCTG‑ACGCAAAGTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGGTCAAAAACATGCAAAATCCGTGAGCGGGGGAAAAAAAAGGTTGCATGAAGACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                                   <  2:200590/288‑1 (MQ=37)                                         aacaaCCGCCACGTTTAATTACAAAAACAGCCTC‑CACTGAACACCAATATTGCACAAAGAAGTTGCATGTGGGATTTGTTTTGGTTAAAAAGCAGGCCTAATCGGTGATAGGAGTAAAAAAAAGGTTTAAAGAAAACTAGCGCGTAGTATACGGCGCTTTCACTGACGAGGGGTGGCGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATGAAAAGTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGagc                                                                                                                  <  2:465985/286‑1 (MQ=12)                                             aCCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    <  2:1208680/251‑1 (MQ=255)                                             aCCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    >  1:1208680/1‑251 (MQ=255)                                             aCCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATACGG‑CCCCAGAAACCAATTAAAATTGGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAgccgcc                                                                                                              >  1:1569062/1‑289 (MQ=255)                                                  cgcgTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTGGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTa                                                                                                         >  1:346379/1‑289 (MQ=255)                                                  cgcgTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTa                                                                                                         >  1:200590/1‑289 (MQ=255)                                                           tgaaatgaGCAGCCTATCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGAATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCtcgtcg                                                                                                 <  1:1134963/289‑1 (MQ=255)                                                               atgaGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCGCCGCAACCAATTAAAATTTGATGAAGTAACGCAGTAAGGTGACGCGGGGTGGAGCAGCCTGGTTGCTCGCCGGGCt                                                                                             >  1:1106372/1‑288 (MQ=255)                                                                    cagcCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAg                                                                                                                                          <  2:285451/238‑1 (MQ=255)                                                                    cagcCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAg                                                                                                                                          >  1:285451/1‑238 (MQ=255)                                                                       ccTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAACTTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                                   >  2:348761/1‑258 (MQ=255)                                                                       ccTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                                   <  1:348761/258‑1 (MQ=255)                                                                                  aCGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAACTCGTCGGGCTCATAACCCGAAGGtcgtcg                                                                          >  1:1214599/1‑289 (MQ=255)                                                                                  aCGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCAAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTATTGTTGAATGCAGAAAAGCGGTACGGTGACGCGGGTCGGAGCAGCCGGGTACCCCGTACGGAACATAACCCGAAGAtcgccg                                                                          >  1:99611/1‑289 (MQ=25)                                                                                             gCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATTACCCGAAGGTCGTCGGTTCAAATCCg                                                               <  1:1544330/289‑1 (MQ=255)                                                                                                       tAGGGTTTAGTGATTTGTTTTTGTTCAAAAGCAAGCCAAATCCGTGATCGGGGTAAACAAAAGGTTGCATGAAAACGCGAGCGTAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTTGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCaa                                                     <  1:864881/289‑1 (MQ=255)                                                                                                           cTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGt                                                                                                          <  1:768517/232‑1 (MQ=255)                                                                                                           cTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGt                                                                                                          >  2:768517/1‑232 (MQ=255)                                                                                                           cTTTAGTAATTTGTGTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGAATGAAAACGCGAGGGGAGTCTAGTGCGCATCGACGGACGCGGGGTGAAGCAGACTGGTAGCTCGTTGGCCTCATAACCCGAAGGTCGTCGGTTCAAATACGT‑CCCCCGCAACCAATTAAAATTGGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCtcgtcg                                                                                                 <  1:1064956/241‑1 (MQ=25)                                                                                                              tAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAg                                                                                                                                               <  2:1247851/192‑1 (MQ=255)                                                                                                              tAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAg                                                                                                                                               >  1:1247851/1‑192 (MQ=255)                                                                                                               aGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGCCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATcca                                             >  1:1701852/1‑287 (MQ=255)                                                                                                                gTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCGGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCACATCCGGCCCCCGCAACCAATCaaa                                            >  1:89944/1‑289 (MQ=255)                                                                                                                    tttgtttttgttCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    <  1:44219/181‑1 (MQ=255)                                                                                                                    tttgtttttgttCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    >  2:44219/1‑181 (MQ=255)                                                                                                                     ttgtttttgttCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCggg                                                                                                                         <  1:978792/207‑1 (MQ=255)                                                                                                                     ttgtttttgttCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCAGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCggg                                                                                                                         >  2:978792/1‑207 (MQ=255)                                                                                                                                        tGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGagca                                                                                                                 <  1:842108/196‑1 (MQ=255)                                                                                                                                        tGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGagca                                                                                                                 >  2:842108/1‑196 (MQ=255)                                                                                                                                                   tGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAg                                                                                                                                          >  1:1358711/1‑160 (MQ=255)                                                                                                                                                   tGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAg                                                                                                                                          <  2:1358711/160‑1 (MQ=255)                                                                                                                                                          ggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAg                                                                                                                                          <  1:910727/153‑1 (MQ=255)                                                                                                                                                          ggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAg                                                                                                                                          >  2:910727/1‑153 (MQ=255)                                                                                                                                                          ggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGACTGGTAGCTCGTCGGGCTCATAACCCGACGGCCGCCGGTTCAAATCCGGCCCCCGCAACCAATCAATATTGATCATACAAAAGCAGTAAGGGGACCCGGGCTTGagcag  >  1:1070769/1‑289 (MQ=18)                                                                                                                                                               aaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAg                                                                                                                                          >  1:28145/1‑148 (MQ=255)                                                                                                                                                               aaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAg                                                                                                                                          <  2:28145/148‑1 (MQ=255)                                                                                                                                                                                      aGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGc                                                                                                       <  1:1076341/160‑1 (MQ=255)                                                                                                                                                                                      aGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGc                                                                                                       >  2:1076341/1‑160 (MQ=255)                                                                                                                                                                                             tagaGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAg                            <  1:985409/225‑1 (MQ=255)                                                                                                                                                                                                  tGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCCACCAATTAAAACTCGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGACgg                                                                                >  1:582353/1‑171 (MQ=255)                                                                                                                                                                                                     gcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                                   >  2:1354304/1‑133 (MQ=255)                                                                                                                                                                                                     gcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                                   <  1:1354304/133‑1 (MQ=255)                                                                                                                                                                                                       aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACACGAAGGTCGCCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAACGCAGTCCgg                    >  1:14216/1‑226 (MQ=255)                                                                                                                                                                                                                           gcagcCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTaaaa                                                                                                                                                         >  1:470012/1‑73 (MQ=34)                                                                                                                                                                                                                                 tGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAgg                                                                                >  1:1612809/1‑140 (MQ=255)                                                                                                                                                                                                                                           tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    >  2:278373/1‑62 (MQ=255)                                                                                                                                                                                                                                           tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTtga                                                                                                                                                    <  1:278373/62‑1 (MQ=255)                                                                                                                                                                                                                                                            aGGTCGTCGGGTCAAATACGA‑CCCCCGAAACCAATTAAAATTGAATGAAGTAAAGCAGAGAGGTGAAGCGGGGTGGAGCAGCCTTGTAGCAGGTCGGTATAAGAACAAGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAg                            <  2:743386/165‑1 (MQ=17)                                                                                                                                                                                                                                                                      ttCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTg                  >  1:743386/1‑165 (MQ=255)                                                                                                                                                                                                                                                                                                 |                                                                                                                                                           TTCTCTTCTTCAGGTTAAAAAATAAGGCGCAACGAAGATAACAAACCGCCGCGTTTAATGAAATGAGCAGCCTCTCCCTG‑ACGCAAATTTTGCACAAAAAATAGGCTTTAGTGATTTGTTTTTGTTCAAAATCATGCCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG‑CCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAG  >  NC_000913/2947181‑2947621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.