mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.2% | 68.0 / 18.9 | 45 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,296,286 | 0 | C | T | 22.5% | 76.7 / 13.5 | 41 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,296,304 | 0 | A | C | 21.4% | 81.7 / 13.2 | 42 | intergenic (+510/+132) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 96 (0.820) | 17 (0.150) | 16/508 | 4.9 | 16.0% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 88 (0.800) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1207790 = | 105 (0.900) | 8 (0.070) | 8/508 | 7.3 | 7.9% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 89 (0.810) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 225468 = | 67 (0.570) | 8 (0.070) | 6/522 | 8.3 | 10.9% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | 4037225 = | 66 (0.580) | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 225468 = | 67 (0.570) | 8 (0.070) | 6/522 | 8.3 | 15.3% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | = 3427068 | 24 (0.210) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913 | 4037216 = | 70 (0.600) | 7 (0.060) | 5/522 | 8.8 | 9.4% | noncoding (76/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 67 (0.590) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427077 | 25 (0.210) | 7 (0.060) | 5/522 | 8.8 | 13.3% | noncoding (76/77 nt) | ileU | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 67 (0.590) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427065 | 24 (0.200) | 7 (0.060) | 5/522 | 8.8 | 13.6% | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913 | 4037225 = | 66 (0.580) | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427065 | 24 (0.200) | 7 (0.060) | 5/522 | 8.8 | 22.9% | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913 | = 3427068 | 24 (0.210) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913 | = 1827132 | 79 (0.670) | 5 (0.040) | 5/522 | 8.8 | 6.3% | coding (1128/1344 nt) | astB | N‑succinylarginine dihydrolase |
| ? | NC_000913 | = 1827166 | 73 (0.640) | coding (1094/1344 nt) | astB | N‑succinylarginine dihydrolase | |||||
| * | ? | NC_000913 | = 4612024 | 116 (0.990) | 4 (0.040) | 4/524 | 9.3 | 3.5% | intergenic (+23/‑104) | osmY/ytjA | periplasmic chaperone OsmY/DUF1328 domain‑containing protein YtjA |
| ? | NC_000913 | = 4612030 | 109 (0.960) | intergenic (+29/‑98) | osmY/ytjA | periplasmic chaperone OsmY/DUF1328 domain‑containing protein YtjA | |||||