| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1259918 | 46 (1.270) | 6 (0.170) | 6/246 | 3.7 | 12.6% | coding (886/1680 nt) | dauA | C4‑dicarboxylic acid transporter |
| ? | NC_000913 | = 1259933 | 40 (1.170) | coding (871/1680 nt) | dauA | C4‑dicarboxylic acid transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCCGGCACGGACGTTAGCGGCAGAACGCGCGATGGCAGCTGTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1259766‑1259918‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcaATCGAATCTCTGCTCTGCGCCGTGGTGCTGGATGGTATGACCGGGACGAAACACAAGGCGAACAGCGAACTGGTTGGACAGGGACTGGGGAATATTATCGCTCCGTTCTTTGGTGGTATTACCGCTACAGCTGCCATCGCG < NC_000913/1259933‑1259793 CCCGGCACGGACGTTAGCGGCAGAACGCGCGATGGCAGCTGTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGG > 5:96815/1‑149 GTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAATCGAATCTCTGCTCTGCGCCGTGGTG > 7:150009/1‑140 GTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAATCGAATCTCTGCTCTGCGCCGTGGTG < 8:150009/140‑1 ATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAATCGAATCTCTGCTCTGCGCCGTGGT < 3:116195/130‑1 ATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAATCGAATCTCTGCTCTGCGCCGTGGT > 4:116195/1‑130 ATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAATCGAATCTCTGCTCTGCGCCGT > 7:76169/1‑106 ATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAATCGAATCTCTGCTCTGCGCCGT < 8:76169/106‑1 GGCGCAATCGAATCTCTACTCTGCGCCGTGGTGCTGGATGGTATGACCGGGACGAAACACAAGGCGAACAGCGAACTGGTTGGACAGGGACTGGGGAATATTATCGCTCCGTTCTTTGGTGGTATTACCGCTACAGCTGCCATCGCG < 3:46650/147‑1 GGCGCAATCGAATCTCTACTCTGCGCCGTGGTGCTGGATGGTATGACCGGGACGAAACACAAGGCGAACAGCGAACTGGTTGGACAGGGACTGGGGAATATTATCGCTCCGTTCTTTGGTGGTATTACCGCTACAGCTGCCATCGCG > 4:46650/1‑147 CCCGGCACGGACGTTAGCGGCAGAACGCGCGATGGCAGCTGTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1259766‑1259918‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcaATCGAATCTCTGCTCTGCGCCGTGGTGCTGGATGGTATGACCGGGACGAAACACAAGGCGAACAGCGAACTGGTTGGACAGGGACTGGGGAATATTATCGCTCCGTTCTTTGGTGGTATTACCGCTACAGCTGCCATCGCG < NC_000913/1259933‑1259793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |