New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2330390 =	28 (0.770)	6 (0.180)	6/242	3.6	16.0%	pseudogene (4013/4605 nt)	yfaS	pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein
	?	NC_000913	2330449 =	37 (1.100)					pseudogene (3954/4605 nt)	yfaS	pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGCCATTTTTGCCGGCTCACGTCAGCGGACCTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGC  >  NC_000913/2330243‑2330535                                                                                                                                                    |                                                                                                                                                  tGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGCCATTTTTGCCGGCTCACGTCAGCGGACCTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGccccc                                                                                                                                                  >  5:155398/1‑149 (MQ=255)                     aaTGTTACTTTGTTGAGCCATTTTTGCCGGCTCACGTCAGCGGACCTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAg                                                                                                                              <  4:13395/149‑1 (MQ=255)                            cTTTGTTGAGCCATTTTTGCCGGCTCACGTCAGCGGACCTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATgc                                                                                                                       <  6:155398/149‑1 (MQ=255)                            cTTTGTTGAGCCATTTTTGCCGGCTCACGTCAGCGGACCTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATgc                                                                                                                       >  6:133880/1‑149 (MQ=255)                                              gCCGGCTCACGTCAGCGGACCTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGCCCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGttt                                                                                                                                >  3:19332/1‑122 (MQ=255)                                              gCCGGCTCACGTCAGCGGACCTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGttt                                                                                                                                <  4:19332/122‑1 (MQ=255)                                                      aCGTCAGCGGACCTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACt                                                                                              <  5:133880/148‑1 (MQ=255)                                                                 ccTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCGAAACAACTGGAGGCATTGTc                                                                                  >  5:40476/1‑149 (MQ=255)                                                                             gcggagATAATTCGTCACCAAAAGAGAGAATGTCCTGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCAAGTTAACTTATGTTTAGCCCATGCGCCCTCAGGCGCAGGCAAAACAACTTGAGGCATTGTCGCCATATAttt                                                                       <  3:23939/148‑1 (MQ=255)                                                                                       ttCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCat                                                                             <  3:56471/132‑1 (MQ=255)                                                                                       ttCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCat                                                                             >  4:56471/1‑132 (MQ=255)                                                                                                       agaATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAgcgcgcg                                            >  2:159142/1‑149 (MQ=255)                                                                                                                    cGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGAt                               <  1:159142/149‑1 (MQ=255)                                                                                                                        cTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCACCAGCCAGTTCATgg                                                      <  6:80657/122‑1 (MQ=255)                                                                                                                        cTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCACCAGCCAGTTCATgg                                                      >  5:80657/1‑122 (MQ=255)                                                                                                                           cccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCACGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAg                        >  2:123464/2‑149 (MQ=255)                                                                                                                           aCCAACACAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAg                        >  2:22162/1‑149 (MQ=255)                                                                                                                             caacccaacGCCAGTCTTCGCCCCCTCCAGTTAATTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGcc                                                                               <  2:72633/92‑1 (MQ=255)                                                                                                                             caacccaacGCCAGTCTTCGCCCCCTCCAGTTAATTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGcc                                                                               >  1:72633/1‑92 (MQ=255)                                                                                                                             caacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCGAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCg                      <  6:40476/149‑1 (MQ=255)                                                                                                                             caacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCg                      >  8:104766/1‑149 (MQ=255)                                                                                                                                   aacGCCAGTCTTCGCCACCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAAATGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCaaa                >  5:105318/1‑149 (MQ=255)                                                                                                                                        cAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACt           >  5:3352/1‑149 (MQ=255)                                                                                                                                                 cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGc  <  7:104766/149‑1 (MQ=255)                                                                                                                                                  ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTg                             <  4:30474/121‑1 (MQ=255)                                                                                                                                                  ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTg                             >  3:30474/1‑121 (MQ=255)                                                                                                                                                  ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTc                   >  7:127618/1‑131 (MQ=255)                                                                                                                                                  ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTc                   <  8:127618/131‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TGGCGTTCAACGGTCACCGGAATGTTACTTTGTTGAGCCATTTTTGCCGGCTCACGTCAGCGGACCTGCACATTTTGCGGCGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGC  >  NC_000913/2330243‑2330535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.