breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,947,5910A.33.3% 32.6 / 17.9 18intergenic (+18/‑16)metW/metVtRNA‑Met/tRNA‑Met
*NC_0009134,296,0600CT31.2% 94.1 / 58.9 78intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 18 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 781369 =96 (0.980)25 (0.260)
+G
13/284 8.3 28.5% noncoding (1/76 nt) lysZ tRNA‑Lys
?NC_000913 = 2521128 30 (0.310)intergenic (+2/‑45) valX/valY tRNA‑Val/tRNA‑Val
* ? NC_000913 781369 =96 (0.980)20 (0.210)
+GAG
8/280 10.4 22.7% noncoding (1/76 nt) lysZ tRNA‑Lys
?NC_000913 = 2521006 43 (0.440)noncoding (76/76 nt) valU tRNA‑Val
* ? NC_000913 2700550 =130 (1.320)4 (0.050) 4/248 11.8 3.6% noncoding (31/77 nt) ohsC sRNA antisense regulator of shoB toxin
?NC_000913 2700601 = 100 (1.170)intergenic (+5/+17) ohsC/acpS sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1
* ? NC_000913 4127239 =104 (1.060)4 (0.040) 4/262 12.2 4.0% intergenic (+14/+47) rpmE/yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
?NC_000913 4127265 = 99 (1.100)intergenic (+40/+21) rpmE/yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
* ? NC_000913 2729475 =51 (0.520)4 (0.040) 4/266 12.4 7.3% intergenic (‑31/+141) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
?NC_000913 = 4168363 54 (0.590)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 2729443 =41 (0.420)4 (0.040) 4/266 12.4 8.9% noncoding (2/76 nt) gltW tRNA‑Glu
?NC_000913 2729485 = 44 (0.480)intergenic (‑41/+131) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
* ? NC_000913 4297505 =96 (0.980)4 (0.040) 4/270 12.5 4.3% coding (1862/2148 nt) fdhF formate dehydrogenase‑H, selenopolypeptide subunit
?NC_000913 4297539 = 89 (0.960)coding (1828/2148 nt) fdhF formate dehydrogenase‑H, selenopolypeptide subunit
* ? NC_000913 3004852 =95 (0.970)4 (0.040) 4/272 12.5 4.4% coding (935/1779 nt) ygeV putative sigma‑54‑interacting transcriptional activator
?NC_000913 3004880 = 84 (0.900)coding (907/1779 nt) ygeV putative sigma‑54‑interacting transcriptional activator
* ? NC_000913 4022006 =93 (0.950)3 (0.030) 3/272 13.3 3.1% coding (62/270 nt) tatA TatABCE protein translocation system subunit
?NC_000913 4022046 = 99 (1.060)coding (102/270 nt) tatA TatABCE protein translocation system subunit
* ? NC_000913 = 274487173 (0.740)3 (0.030) 3/274 13.3 3.9% coding (469/768 nt) trmD tRNA m(1)G37 methyltransferase, SAM‑dependent
?NC_000913 = 2744877 76 (0.810)coding (463/768 nt) trmD tRNA m(1)G37 methyltransferase, SAM‑dependent