| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 395,476 | G→T | 75.1% | S271Y (TCT→TAT) | ampH ← | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 395,476 | 0 | G | T | 75.1% | 158.9 / 63.6 | 96 | S271Y (TCT→TAT) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| Reads supporting (aligned to +/- strand): ref base G (12/12); new base T (38/34); total (50/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
CTCTTTCGGGGCCATATATACCCAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGTGAGGGGGT > NC_000913/395331‑395621 | ctctTTCGGGGCCATATATACCCAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCGGATAAAAATCATATg < 3:22675/149‑1 (MQ=255) tctTTCGGGGCCATATATACCCAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGa > 8:336316/1‑149 (MQ=255) tctTTCGGGGCCATATATACCCAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGa > 2:258846/1‑149 (MQ=255) tCGGGGCCATATATACCCAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGAc < 6:353776/146‑1 (MQ=255) atatatACCCAACCTAAACCACGCGCATCCGCTTTGCCGGCGACATCCGTGCCCATCACTTTAGTAAACTGCGCGCGCTGATAAATCAACATCTGCATGCGATCTGACTCTTTACTGCGCTGATAACAATCATATTACAAATActgctg > 8:96591/1‑149 (MQ=255) tataCCCAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCAt > 4:168971/1‑149 (MQ=255) taCCCAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATc < 1:361446/148‑1 (MQ=255) cacAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAg < 7:396359/147‑1 (MQ=255) ccAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCCCTTTCGTAAACTGCGCGCTCTGATAAATCAACGTCTGCATGTGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAgc > 3:27473/1‑149 (MQ=255) ccAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTCCTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAgc < 1:127330/149‑1 (MQ=255) ccAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAgc > 7:421839/1‑149 (MQ=255) aaCCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCGTGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAgcg > 2:185223/1‑148 (MQ=255) aaCCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAgcg > 8:357577/1‑148 (MQ=255) ccTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGcat < 5:363407/149‑1 (MQ=255) ccTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGa < 8:223113/122‑1 (MQ=255) ccTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGa > 7:223113/1‑122 (MQ=255) ccTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGAGAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGcat > 4:92607/1‑149 (MQ=255) tAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGcatca > 4:138584/1‑149 (MQ=255) aaCCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCata < 3:138584/149‑1 (MQ=255) aaCCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGAAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGcatca < 7:68493/147‑1 (MQ=255) aCCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCatat < 1:258846/149‑1 (MQ=255) ccAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCTCTGATAAAAATCATATGACAAATACTGCTGCATCAAGCGAATCATATc > 6:341042/1‑149 (MQ=255) cAAGCGCATCCGCTTTGCCGGGGACATACATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCg > 1:240794/1‑149 (MQ=255) aaGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGc > 3:180975/1‑149 (MQ=255) aGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGc > 4:91799/1‑148 (MQ=255) gcgcATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCa < 8:75718/149‑1 (MQ=255) aTCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGGTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCCTCCAGCGCATCATATCGCCAGGCg < 6:133647/149‑1 (MQ=255) cGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTg < 4:180975/148‑1 (MQ=255) cGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTg < 8:421839/148‑1 (MQ=255) gCTTTGCCGGTGACATCCCTGCAAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTg < 4:279324/147‑1 (MQ=255) gCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTg > 3:279324/1‑147 (MQ=255) cTTTGCCTTGGACATACATGCCAATCACTTTCGTAAACTGAGCGAGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGaa < 5:341042/149‑1 (MQ=255) cTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGaa > 5:341224/1‑149 (MQ=255) tGCCGGGGACATCCGTGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATa < 1:185223/148‑1 (MQ=255) tGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATa < 7:357577/148‑1 (MQ=255) gCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATGAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAg < 2:429439/148‑1 (MQ=255) ccGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGAc < 3:64185/149‑1 (MQ=255) tCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGaa > 6:162723/1‑135 (MQ=255) ccATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTg > 3:95315/1‑149 (MQ=255) aTGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCAAGGCGTGGAATAGACGCCGCCGCTGc > 1:428569/1‑148 (MQ=255) tGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGcatca > 4:155620/1‑114 (MQ=255) tGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGcatca < 3:155620/114‑1 (MQ=255) tGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGcc > 2:149919/1‑148 (MQ=255) cAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCCGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAAtt > 1:316232/1‑149 (MQ=255) tttCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCa > 1:152915/1‑149 (MQ=255) tAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCgtg > 3:357574/1‑149 (MQ=255) aaCTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCgtgt < 7:336316/148‑1 (MQ=255) tGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTAtt > 3:157531/1‑149 (MQ=255) cgcgcgcTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTg < 5:382367/148‑1 (MQ=255) cgcgcgcTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTAtt < 8:162324/147‑1 (MQ=255) gcgcgcTGATAAATCAACGGCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCa < 3:168971/149‑1 (MQ=255) gcgcTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCAc > 3:397675/1‑148 (MQ=255) gcTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATGAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGa < 1:149919/149‑1 (MQ=255) aTAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTg < 4:384221/148‑1 (MQ=255) aaTCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCgtgt < 8:168910/131‑1 (MQ=255) aaTCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCgtgt > 7:168910/1‑131 (MQ=255) aaTCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCAc < 4:95315/149‑1 (MQ=255) tCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGca < 6:411398/75‑1 (MQ=255) tCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGca > 5:411398/1‑75 (MQ=255) tCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGA‑‑‑CGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCgcgc < 3:92607/149‑1 (MQ=255) tGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAg > 3:5910/1‑148 (MQ=255) cATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCGTCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCaa > 8:71112/1‑149 (MQ=255) cATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCaa > 5:20687/1‑149 (MQ=255) tGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAAc > 8:23334/1‑148 (MQ=255) tGCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAAc > 2:294115/1‑148 (MQ=255) gCGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCa > 1:19093/1‑149 (MQ=255) cGATCTGCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGGGTTATTGCACGGACTGGCACCGCGCTCAGCAACCAt < 1:20878/149‑1 (MQ=255) cGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCAt < 6:20687/149‑1 (MQ=255) aTCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCAGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCAtt < 4:27473/148‑1 (MQ=255) gCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGAc < 1:179996/121‑1 (MQ=255) gCCTGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGAc > 2:179996/1‑121 (MQ=255) tGGTTACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAAcggcg > 2:113119/1‑149 (MQ=255) gTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAAcggcgg < 4:157531/148‑1 (MQ=255) ttACTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCTTCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCa < 7:71112/149‑1 (MQ=255) aCTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAAc < 6:128929/132‑1 (MQ=255) aCTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAAc > 5:128929/1‑132 (MQ=255) aCTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCAc < 2:152915/148‑1 (MQ=255) aCTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCAc < 6:341224/148‑1 (MQ=255) aCTGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACt > 5:372767/1‑149 (MQ=255) tGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGa > 3:331965/1‑149 (MQ=255) tGCGCTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGa > 4:231869/1‑149 (MQ=255) gcgcTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGAt > 4:116068/1‑149 (MQ=255) gcTGATAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATcc > 3:169338/1‑149 (MQ=255) aTAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGt < 7:194883/148‑1 (MQ=255) aTAAAAATCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGt < 5:97936/148‑1 (MQ=255) aTAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGAt > 6:206346/1‑143 (MQ=255) aTAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGAt < 5:206346/143‑1 (MQ=255) aaaaaTCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCgtg < 4:193457/89‑1 (MQ=255) aaaaaTCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCgtg > 3:193457/1‑89 (MQ=255) aaaaaTCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGTGAg > 2:403671/1‑149 (MQ=255) aaaaaTCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGTGAg > 8:98237/1‑149 (MQ=255) aaaTCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGTGAggg > 2:39572/1‑149 (MQ=255) aaTCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGTGAgggg < 4:357574/149‑1 (MQ=255) aaTCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGTGAgggg < 3:91799/149‑1 (MQ=255) tCATATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGTGAGGGGgt > 3:94973/1‑149 (MQ=255) tCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGTGAGGGGgt > 3:374772/1‑149 (MQ=255) | CTCTTTCGGGGCCATATATACCCAACCTAAACCAAGCGCATCCGCTTTGCCGGGGACATCCATGCCAATCACTTTCGTAAACTGCGCGCGCTGATAAATCAACGTCTGCATGCGATCTGCCTGGTTACTGCGCTGATAAAAATCAGATGACAAATACTGCTGCATCCAGCGCATCATATCGCCAGGCGTGGAATAGACGCCGCCGCTGCCAATTGCCGCCAGCGTGTTATTGCACGGACTGGCACCGCGCTCAGCAACCATTAAACGGCGGCACTGATCCGGTGAGGGGGT > NC_000913/395331‑395621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |