Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,801,411 IS5 (–) +4 bp coding (586‑589/1017 nt) waaR ← lipopolysaccharide 1,2‑glucosyltransferase; UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288919 =NA (NA)36 (1.030) 29/254 0.3 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 3801414 0 (0.000)coding (586/1017 nt) waaR lipopolysaccharide 1,2‑glucosyltransferase; UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase
* ? NC_000913 = 2290113NA (NA)59 (1.690) 39/254 0.1 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 3801411 = 0 (0.000)coding (589/1017 nt) waaR lipopolysaccharide 1,2‑glucosyltransferase; UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase

GGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289968‑2290113
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATT  >  NC_000913/3801411‑3801558
                                                                                                                                                                                                                                                                                                      
GGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                                     >  5:74625/1‑147
 GACAAGAAAATCTCTTTTCTGGTCAGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                                                                                                  >  4:9601/1‑149
 GACAAGAAAATCTCTTTTCTGGTCAGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                                                                                                  <  3:9601/149‑1
  ACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT                                                                                                                                                 <  1:90288/149‑1
     AGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTT                                                                                                                                              <  2:132851/149‑1
           TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGT                                                                                                                                          >  5:50937/1‑147
              CTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT                                                                                                                                                 >  6:167095/1‑137
              CTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT                                                                                                                                                 <  5:167095/137‑1
                       TCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTT                                                                                                                             >  7:149956/1‑148
                           ACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAA                                                                                                                          <  8:149956/147‑1
                           ACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTCAAGT                                                                                                                        <  6:50937/149‑1
                               CGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                                   >  3:67568/1‑118
                               CGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                                   <  4:67568/118‑1
                                      TGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAAC                                                                                                              >  5:5263/1‑148
                                           AATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                                     <  8:75521/104‑1
                                           AATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                                     >  7:75521/1‑104
                                                ACTGTCGGCGAAGGTAAGTAGATGACTCATGAGGATCCCTGTTCTATGGCTCCAGATGACAAACATGTTCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAA                                                                                                    <  5:122115/148‑1
                                                      GGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                                     <  6:8305/93‑1
                                                                  TTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTA                                                                                 <  5:130429/149‑1
                                                                       GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                                   >  5:154548/1‑78
                                                                       GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                                   <  6:154548/78‑1
                                                                            ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                                                                                                  >  4:49209/1‑74
                                                                            ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG                                                                                                                                                  <  3:49209/74‑1
                                                                             TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCA                                                                      <  6:5263/149‑1
                                                                                     CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGG                                                                          >  3:7400/1‑137
                                                                                     CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATCCAGG                                                                          <  4:7400/137‑1
                                                                                       TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAA                                                                                               <  2:81721/114‑1
                                                                                       TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAA                                                                                               >  1:81721/1‑114
                                                                                       TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAA                                                                                                                          >  2:69880/1‑87
                                                                                       TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAA                                                                                                                          <  1:69880/87‑1
                                                                                                 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTT                                                  >  6:54184/1‑149
                                                                                                    CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTC                                               >  6:171067/1‑149
                                                                                                    CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTT                                                <  5:54184/148‑1
                                                                                                      GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTT                                             >  1:151378/1‑149
                                                                                                      GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTT                                             <  2:151378/149‑1
                                                                                                         GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTT                                             >  8:45538/1‑146
                                                                                                         GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTT                                             <  7:45538/146‑1
                                                                                                            AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTG                                       >  1:119545/1‑149
                                                                                                            AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTG                                                             >  1:20783/1‑127
                                                                                                            AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTG                                                             <  2:20783/127‑1
                                                                                                                   ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGT                                                                                             <  8:104465/88‑1
                                                                                                                   ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGT                                                                                             >  7:104465/1‑88
                                                                                                                    TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACT                                                                                          <  8:140698/90‑1
                                                                                                                    TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACT                                                                                          >  7:140698/1‑90
                                                                                                                        ATATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTT                           <  5:171067/149‑1
                                                                                                                          ATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCT                                                              >  5:39618/1‑112
                                                                                                                          ATCAGGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCT                                                              <  6:39618/112‑1
                                                                                                                              GGGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGA                                                           <  4:44605/111‑1
                                                                                                                               GGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAA                     >  6:135990/1‑148
                                                                                                                               GGACTTGTTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAA                     <  5:135990/148‑1
                                                                                                                                      TTCGCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCA             >  4:48874/1‑149
                                                                                                                                         GCACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACC          >  7:136433/1‑149
                                                                                                                                          CACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCG         >  4:54465/1‑149
                                                                                                                                           ACCTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGC        >  5:61443/1‑149
                                                                                                                                             CTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAG                                                                                   <  6:31306/72‑1
                                                                                                                                             CTTCCTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAG                                                                                   >  5:31306/1‑72
                                                                                                                                                 CTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATT  <  8:136433/149‑1
                                                                                                                                                 CTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGA                                                           >  7:69575/1‑92
                                                                                                                                                 CTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGA                                                           <  8:69575/92‑1
                                                                                                                                                                                                                                                                                                      
GGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289968‑2290113
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATT  >  NC_000913/3801411‑3801558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.