mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.5% | 151.9 / 82.1 | 105 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 39 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 71 (0.620) | 32 (0.320) | 26/240 | 5.2 | 35.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 55 (0.540) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 73 (0.640) | 30 (0.300) | 26/240 | 5.2 | 33.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 55 (0.540) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4263226 | 143 (1.240) | 9 (0.080) | 9/254 | 11.3 | 6.3% | intergenic (+144/+22) | pspG/qorA | phage shock protein G/quinone oxidoreductase, NADPH‑dependent |
| ? | NC_000913 | = 4263231 | 136 (1.270) | intergenic (+149/+17) | pspG/qorA | phage shock protein G/quinone oxidoreductase, NADPH‑dependent | |||||
| * | ? | NC_000913 | 905931 = | 129 (1.120) | 10 (0.090) | 9/260 | 11.5 | 7.7% | coding (823/1014 nt) | ybjS | putative NAD(P)H‑dependent oxidoreductase |
| ? | NC_000913 | = 912978 | 115 (1.050) | coding (837/1653 nt) | hcp | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases | |||||
| * | ? | NC_000913 | 1552244 = | NA (NA) | 5 (0.060) +30 bp |
4/212 | 12.8 | NA | intergenic (+253/+154) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 1736014 | NA (NA) | noncoding (32/74 nt) | REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 1552066 = | NA (NA) | 5 (0.060) +30 bp |
4/212 | 12.8 | NA | intergenic (+75/+332) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 1736014 | NA (NA) | noncoding (32/74 nt) | REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2729475 = | 62 (0.540) | 7 (0.070) | 5/252 | 13.6 | 12.4% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 41 (0.390) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 120144 = | 117 (1.020) | 5 (0.050) | 5/252 | 13.6 | 4.3% | intergenic (+9/+34) | ampE/aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| ? | NC_000913 | 120169 = | 114 (1.070) | intergenic (+34/+9) | ampE/aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter | |||||
| * | ? | NC_000913 | = 4374578 | NA (NA) | 6 (0.060) | 5/258 | 13.8 | NA | noncoding (81/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4374589 | NA (NA) | noncoding (92/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3248814 = | 154 (1.340) | 4 (0.040) | 4/252 | 14.3 | 3.0% | coding (376/384 nt) | mzrA | modulator of EnvZ/OmpR regulon |
| ? | NC_000913 | 3248839 = | 120 (1.130) | intergenic (+17/‑130) | mzrA/yqjC | modulator of EnvZ/OmpR regulon/DUF1090 family putative periplasmic protein | |||||