New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2139570 =	35 (1.210)	4 (0.150)	4/230	3.1	11.8%	intergenic (+85/+189)	yegH/asmA	inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
	?	NC_000913	2139603 =	28 (1.060)					intergenic (+118/+156)	yegH/asmA	inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCGTGCAGAAGGTGCAGATTATACCGCTGCGTAAGGATGGCGAGATGGAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGA  >  NC_000913/2139423‑2139712                                                                                                                                                    |                                                                                                                                               cgcgTGCAGAAGGTGCAGATTATACCGCTGCGTAAGGATGGCGAGATGGAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTg                                                                                                                                               >  2:91751/1‑149 (MQ=255)             gTGCAGATTATACCGCTGCGTAAGGATGGCGAGATGGAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGgtggtg                                                                                                                                    >  2:115809/1‑148 (MQ=255)                cAGATTATACCGCTGCGTAAGGATGGCGAGATGGAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGggtggctcaat                                                                                                                                <  1:91751/149‑7 (MQ=255)                cAGATTATACCGCTGCGTAAGGAGGGCGAGATGGAGTACGAGGTGTGATGGTATCGGGCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGgag                                                                                                                                 <  8:110881/148‑1 (MQ=255)                   aTTATACCGCTGCGTAAGGATGGCGAGATGGAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTg                                                                                                                             >  8:48463/1‑149 (MQ=255)                        aCCGCTGCGTAAGGATGGCGAGATGGAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAgg                                                                                                                                          <  1:38349/131‑1 (MQ=255)                        aCCGCTGCGTAAGGATGGCGAGATGGAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAgg                                                                                                                                          >  2:38349/1‑131 (MQ=255)                                                 gAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCg                                                                                                       <  6:78999/141‑1 (MQ=255)                                                 gAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCg                                                                                                       >  5:78999/1‑141 (MQ=255)                                                    tACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGtt                                                                                            <  7:48463/149‑1 (MQ=255)                                                       gAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCa                                                                                         >  7:100789/1‑149 (MQ=255)                                                         ggTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGAtt                                                                                                                              >  8:66798/1‑110 (MQ=255)                                                         ggTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGAtt                                                                                                                              <  7:66798/110‑1 (MQ=255)                                                                tGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGc                                                                                  >  1:134026/1‑147 (MQ=255)                                                                    aTCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTg                                                                                                                   >  8:57746/1‑110 (MQ=255)                                                                    aTCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTg                                                                                                                   <  7:57746/110‑1 (MQ=255)                                                                       ggTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGc                                                                                                     >  8:11457/1‑121 (MQ=255)                                                                       ggTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGc                                                                                                     <  7:11457/121‑1 (MQ=255)                                                                        gTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACAt                                                                         >  5:81181/1‑148 (MQ=255)                                                                        gTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATc                                                                        <  1:115809/149‑1 (MQ=255)                                                                                    aaTAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGaa                                                            >  3:54648/1‑149 (MQ=255)                                                                                    aaTAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGaa                                                            <  4:54648/149‑1 (MQ=255)                                                                                                 aaTAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCAtagta                                                                                    <  2:55736/112‑1 (MQ=255)                                                                                                 aaTAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCAtagta                                                                                    >  1:55736/1‑112 (MQ=255)                                                                                                   tAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTa                                             <  8:100789/149‑1 (MQ=255)                                                                                                   tAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAAAATCAAGTGAACGGAACAGCCTTCGATCTTa                                             <  2:134026/149‑1 (MQ=255)                                                                                                      gATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACat                                          <  3:78427/149‑1 (MQ=255)                                                                                                       aTGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACata                                         >  2:44860/1‑149 (MQ=255)                                                                                                           gggAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATAtt                                       >  2:20187/1‑147 (MQ=255)                                                                                                            ggAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAg                                    <  1:44860/149‑1 (MQ=255)                                                                                                                            cGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATgc                       <  6:81181/146‑1 (MQ=255)                                                                                                                                       cgGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTa                                             <  7:77894/113‑1 (MQ=255)                                                                                                                                       cgGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTa                                             >  8:77894/1‑113 (MQ=255)                                                                                                                                             cccGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCg   >  8:42473/1‑149 (MQ=255)                                                                                                                                              ccGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGa  >  2:148111/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                               CGCGTGCAGAAGGTGCAGATTATACCGCTGCGTAAGGATGGCGAGATGGAGTACGAGGTGTGATGGTATCGGTCATTTTACCCAATAGCCGAAAGGAATAAGATGAGGGAACCGCGCCATCGGCGATTTACCGCCGGGAGCCCGGGTTGCCAGGGTGGTGGAGATTGAGCCACCCTGGCACGTTCACCGGCTTGAGCGTTCCATAGTAGCGAGGAACATCAAGTGAACGGAACAGCCTTCGATCTTACATATTCAGAATATAATGATGCCGCCACGAACGCCTGATGCGA  >  NC_000913/2139423‑2139712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.