New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1169379	26 (1.030)	4 (0.170)	4/234	2.4	13.9%	intergenic (+49/+33)	bhsA/ldtC	biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
	?	NC_000913	= 1169384	26 (1.130)					intergenic (+54/+28)	bhsA/ldtC	biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
Rejected: Frequency below/above cutoff threshold.

TATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATT  >  NC_000913/1169273‑1169527                                                                                                           |                                                                                                                                                     tATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGtt                                                                                                            >  5:45339/1‑149 (MQ=255)           gTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCa                                                                                                  >  1:49553/1‑149 (MQ=255)            tAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCAc                                                                                                 >  5:100218/1‑149 (MQ=255)               ccGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACtt                                                                                               >  3:107846/1‑148 (MQ=255)                cGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTtga                                                                                             >  1:92008/1‑149 (MQ=255)                      gAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACAcggcatgtcgcggggaaaaaatcagcagtagcaggcat                                                                                                                <  8:36829‑M1/124‑39 (MQ=255)                      gAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACAcggcatgtcgcggggaaaaaatcagcagtagcaggcat                                                                                                                >  7:36829‑M1/1‑86 (MQ=255)                           cccTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTgg                                                                                                       >  1:61895/1‑128 (MQ=255)                           cccTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTgg                                                                                                       <  2:61895/128‑1 (MQ=255)                           cccTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGa                                                                                   <  2:49553/148‑1 (MQ=255)                             cTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGtgtcgcggggaaaaaatcagcagtagcaggcattaatgag                                                                                                         >  8:29715‑M2/1‑84 (MQ=255)                             cTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGtgtcgcggggaaaaaatcagcagtagcaggcattaatgag                                                                                                         <  7:29715‑M2/124‑41 (MQ=255)                             cTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACAt                                                                                >  8:75237/1‑149 (MQ=255)                             cTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACAt                                                                                <  6:45339/149‑1 (MQ=255)                                  tGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCAcc                                                                           <  6:100218/149‑1 (MQ=255)                                     aaCAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCgg                                                                         >  1:65972/1‑148 (MQ=255)                                          cagTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGAGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATcac                                                                   >  5:13584/1‑147 (MQ=255)                                               aTTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAAc                                                              <  7:75237/149‑1 (MQ=255)                                                       ataaGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGAcatc                                                       >  7:3895/1‑148 (MQ=255)                                                         aaGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGAcatccat                                                    >  8:36173/1‑149 (MQ=255)                                                                    cTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACAcggcatgtcgcggggaaaaaatcagcagtagcaggcattaatgagggttaatgcttatttataaattactgctgttccatggag                                                                  <  7:29715‑M1/124‑85 (MQ=255)                                                                    cTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACAcggcatgtcgcggggaaaaaatcagcagtagcaggcattaatgagggttaatgcttatttataaattactgctgttccatggag                                                                  >  8:29715‑M1/1‑40 (MQ=255)                                                                       aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCAt                                        <  7:36173/147‑1 (MQ=255)                                                                       aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCa                                      <  8:3895/149‑1 (MQ=255)                                                                           aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGtgtcgcggggaaaaaatcagcagtagcaggcattaatgagggttaatgcttatttataaattactgctgttccatggagggtattc                                                           <  8:36829‑M2/124‑87 (MQ=255)                                                                           aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGtgtcgcggggaaaaaatcagcagtagcaggcattaatgagggttaatgcttatttataaattactgctgttccatggagggtattc                                                           >  7:36829‑M2/1‑38 (MQ=255)                                                                                     ctgctgATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGt                         <  2:92008/148‑1 (MQ=255)                                                                                       gctgATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTtgat                                                                                            >  5:38644/1‑79 (MQ=255)                                                                                       gctgATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTtgat                                                                                            <  6:38644/79‑1 (MQ=255)                                                                                                  ccccGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCt            <  4:107846/148‑1 (MQ=255)                                                                                                   cccGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACa                                                                                                                 >  3:4540/1‑46 (MQ=255)                                                                                                   cccGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACa                                                                                                                 <  4:4540/46‑1 (MQ=255)                                                                                                   cccGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCtt           >  1:3107/1‑148 (MQ=255)                                                                                                           aTGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGatt  <  2:3107/149‑1 (MQ=255)                                                                                                           |                                                                                                                                                     TATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATT  >  NC_000913/1169273‑1169527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.