| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3948434 | 26 (1.030) | 4 (0.170) | 4/238 | 2.4 | 14.0% | intergenic (+10/+15) | yifE/yifB | UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator |
| ? | NC_000913 | = 3948439 | 25 (1.060) | intergenic (+15/+10) | yifE/yifB | UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCTGACGTGTGATAATGTCAGACTGATCAATATCAGCAATGGTTCGTGCAACTTTC > NC_000913/3948291‑3948575 | aGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGATGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAAt > 2:19604/1‑149 (MQ=255) aaGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTa < 5:2070/149‑1 (MQ=255) gtgtGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGtt > 6:89814/1‑149 (MQ=255) tgtgGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGttt < 5:89814/149‑1 (MQ=255) tGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGa < 6:80074/148‑1 (MQ=255) aCGCGTATTAAGCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGATGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGc < 1:19604/148‑1 (MQ=255) ttAAGCGTCCAAAACGTTTTCATACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTAt < 1:32161/114‑1 (MQ=255) ttAAGCGTCCAAAACGTTTTCATACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTAt > 2:32161/1‑114 (MQ=255) gCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTa > 4:81683/1‑109 (MQ=255) gCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTa < 3:81683/109‑1 (MQ=255) aaaaCGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCatttcgccctttttat < 3:60841‑M1/102‑17 (MQ=255) aaaaCGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCatttcgccctttttat > 4:60841‑M1/1‑86 (MQ=255) aaaCGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGa > 1:102318/1‑148 (MQ=255) acCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGcct > 8:43703/1‑149 (MQ=255) acCCATTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACCCCCATTCTGACCATAAAAAAAAAGGGCGAAATGCCCTTTTTTTAAGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCCATAGCTAACTGgct > 6:35859/1‑149 (MQ=255) ccTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCatttcgccctttttattaatcgtca < 5:30694‑M1/96‑26 (MQ=255) ccTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCatttcgccctttttattaatcgtca > 6:30694‑M1/1‑71 (MQ=255) ggTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCt < 7:43703/149‑1 (MQ=255) gTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCTCTCGATAGCTAACTGCCTCCTGCAAATGCt > 3:78016/1‑148 (MQ=255) cGCAGGTTGAAGGTGCTGAAGACTACTCCGATTCTGACGATAAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGTTGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCTGACgtgt < 5:35859/149‑1 (MQ=255) aaGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCTGACGTGTGATAATGTCAGACTGa < 2:102318/147‑1 (MQ=255) aaGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCTGACGTGTGATAATGTCAGACTGAt < 1:134627/148‑1 (MQ=255) acCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCTGAc > 4:104050/1‑119 (MQ=255) acCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCTGAc < 3:104050/119‑1 (MQ=255) tGACGATTAATAAAAAGGGCGAAATgccctttttattaatcgtcagaatcggtgtagtcttcagcaccttcaacctgcggtttaccgccggaaagg < 5:30694‑M2/96‑72 (MQ=255) tGACGATTAATAAAAAGGGCGAAATgccctttttattaatcgtcagaatcggtgtagtcttcagcaccttcaacctgcggtttaccgccggaaagg > 6:30694‑M2/1‑25 (MQ=255) aCGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCaaa > 4:62954/1‑102 (MQ=255) aCGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCaaa < 3:62954/102‑1 (MQ=255) ataaAAAGGGCGAAATgccctttttattaatcgtcagaatcggtgtagtcttcagcaccttcaacctgcggtttaccgccggaaagggtgtgaaaacgtttt > 4:60841‑M2/1‑16 (MQ=255) ataaAAAGGGCGAAATgccctttttattaatcgtcagaatcggtgtagtcttcagcaccttcaacctgcggtttaccgccggaaagggtgtgaaaacgtttt < 3:60841‑M2/102‑87 (MQ=255) taaAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGcctc > 7:70608/1‑87 (MQ=255) taaAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGcctc < 8:70608/87‑1 (MQ=255) aaaaGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCTGACGTGTGATAATGTCAGACTGATCAATATCAGCAATGGTTCGTGCAACttt > 7:71973/1‑148 (MQ=255) aaaaGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCTGACGTGTGATAATGTCAGACTGATCAATATCAGCAATGGTTCGTGCAACTTTc < 8:34303/149‑1 (MQ=255) | AGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCACACCCTTTCCGGCGGTAAACCGCAGGTTGAAGGTGCTGAAGACTACACCGATTCTGACGATTAATAAAAAGGGCGAAATGCCCTTTTTTTATGTCAGTAGTTTCTGCAGATGGATGAGCAAACGGTCAATCGCTCGATAGCTAACTGCCTCCTGCAAATGCTGACGTGTGATAATGTCAGACTGATCAATATCAGCAATGGTTCGTGCAACTTTC > NC_000913/3948291‑3948575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |