mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.2% | 93.0 / 88.6 | 94 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 380,013 | 0 | G | . | 23.5% | 79.9 / 25.5 | 36 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| Marginal new junction evidence (lowest skew 10 of 75 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 132 (1.240) | 16 (0.160) | 16/268 | 7.5 | 11.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 123 (1.230) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 349969 | NA (NA) | 4 (0.060) +59 bp |
4/168 | 9.5 | NA | noncoding (365/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 349972 | NA (NA) | intergenic (+400/‑40) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase | |||||
| * | ? | NC_000913 | = 349876 | 93 (0.870) | 4 (0.060) +59 bp |
4/168 | 9.5 | 6.9% | noncoding (272/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 349972 | NA (NA) | intergenic (+400/‑40) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase | |||||
| * | ? | NC_000913 | = 349783 | 58 (0.540) | 4 (0.060) +59 bp |
4/168 | 9.5 | 10.5% | noncoding (179/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 349972 | NA (NA) | intergenic (+400/‑40) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase | |||||
| * | ? | NC_000913 | 4542682 = | 131 (1.230) | 9 (0.090) | 9/268 | 10.3 | 6.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 126 (1.260) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1015911 | 129 (1.210) | 6 (0.060) | 6/262 | 11.7 | 4.9% | intergenic (+29/+41) | rmf/fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| ? | NC_000913 | = 1015912 | 116 (1.190) | intergenic (+30/+40) | rmf/fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase | |||||
| * | ? | NC_000913 | = 1287084 | 41 (0.390) | 8 (0.090) | 5/246 | 11.8 | 11.4% | noncoding (153/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
| ? | NC_000913 | 1287557 = | 89 (0.970) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 4343292 | 113 (1.060) | 5 (0.050) | 5/270 | 12.6 | 4.5% | intergenic (+26/‑77) | melA/melB | alpha‑galactosidase, NAD(P)‑binding/melibiose:sodium symporter |
| ? | NC_000913 | = 4343302 | 105 (1.040) | intergenic (+36/‑67) | melA/melB | alpha‑galactosidase, NAD(P)‑binding/melibiose:sodium symporter | |||||
| * | ? | NC_000913 | 1757141 = | 123 (1.160) | 6 (0.060) | 5/270 | 12.6 | 5.0% | intergenic (+31/‑280) | pykF/lpp | pyruvate kinase I/murein lipoprotein |
| ? | NC_000913 | 1757161 = | 110 (1.090) | intergenic (+51/‑260) | pykF/lpp | pyruvate kinase I/murein lipoprotein | |||||
| * | ? | NC_000913 | = 4027503 | 113 (1.060) | 4 (0.040) +CTACGGTTCGGACTATT |
4/252 | 12.7 | 3.9% | noncoding (182/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 4027554 | NA (NA) | noncoding (233/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||