Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)140 (1.530) 98/284 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)116 (1.260) 77/284 0.1 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 251 total aligned reads displayed.

CAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTA  >  NC_000913/1979341‑1979636
                                                                                                                                                    |                                                                                                                                                   
caagcaaAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAACTAACTCCCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                                     <  6:218433/149‑1 (MQ=255)
  aGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAg                                                                                                                                                    >  8:110013‑M1/1‑147 (MQ=255)
   gCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAgga                                                                                                                                                  <  7:349885‑M1/149‑4 (MQ=255)
     gggataacgccttaaatggcgaagaaacggtctaaataggctgattcacggcatttacgggagaaaaaatcggctcaaaaatgaagaaatgaaatgaattcgtcagccgagaagaatttccgctcgtattagcgccttccCtaattttg                                                                                                                                                <  6:52338‑M1/9‑4 (MQ=255)
     gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                                >  3:175490‑M1/141‑149 (MQ=255)
     gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaa                                                                                                                                                 >  2:138801‑M1/141‑148 (MQ=255)
     aaaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATAATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaag                                                                                                                                                >  4:76774‑M1/1‑144 (MQ=255)
       aaaTGAAACAGGAATAATCGAAATGGTGTGTTGCGCACAGTGAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                              <  7:313919‑M1/149‑8 (MQ=255)
       aaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                              >  8:307686‑M1/1‑142 (MQ=255)
        ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagacgagaagaatttccccgcgtatgcgcaccttccCTAAttaaaga                                                                                                                                              <  4:24925‑M1/11‑3 (MQ=255)
         aTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAAGCACTTACATGAAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCCCAACAAACTAAggaaggtcc                                                                                                                                            >  5:307318‑M1/1‑140 (MQ=255)
           acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaa                                                                                                                                          >  2:68650‑M1/135‑149 (MQ=255)
             aaCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                         >  8:248239‑M1/1‑136 (MQ=255)
               cttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaaaatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttccATAATTAAATACaaagaaa                                                                                                                                      <  2:271194‑M1/19‑1 (MQ=255)
                  aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                                    <  5:146591‑M1/21‑1 (MQ=255)
                   catggcgaagaaacggtctaaataggctgattccaggcatatacgggagaaaaaatcggctcaaccatcaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccatccCTAATTAAATACAAAGACAGGc                                                                                                                                   >  2:247313‑M1/127‑148 (MQ=255)
                   aataatCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcc                                                                                                                                  <  5:209417‑M1/149‑20 (MQ=255)
                      ggcgaagaaacggtctaaataggctgaatcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaaataaatgaatgagtcagacgagaataatttccccgcttattcgctcattccCTAAATAAATACATAGAAATGcaac                                                                                                                                <  4:143479‑M1/25‑1 (MQ=255)
                         gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                             <  2:22345‑M1/28‑1 (MQ=255)
                         gaagaaacggtctaaataggctcattcaacgcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcacccgagaagaatttccccgattattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                             <  2:149871‑M1/28‑1 (MQ=255)
                          gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatat                                                                                                                           <  1:102987‑M1/149‑27 (MQ=255)
                          gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatat                                                                                                                           >  1:255606‑M1/1‑123 (MQ=255)
                          gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgata                                                                                                                            <  6:303634‑M1/148‑26 (MQ=255)
                           agaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                          >  2:35216‑M1/119‑149 (MQ=255)
                            gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                                 >  2:304686‑M1/118‑141 (MQ=255)
                            gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                                 <  1:304686‑M1/24‑1 (MQ=255)
                            aaTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatga                                                                                                                         <  8:338984‑M1/149‑29 (MQ=255)
                                  gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatg                                                                                                                   >  8:66874‑M1/112‑149 (MQ=255)
                                   tGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                                                                                  >  1:183800‑M1/1‑114 (MQ=255)
                                       gcgcACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                               <  7:248239‑M1/148‑39 (MQ=255)
                                              tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                                       <  1:366098‑M1/50‑1 (MQ=255)
                                                     aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                                                                                >  3:284964‑M1/93‑149 (MQ=255)
                                                      ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAAAAATCAACTTAATGTTAATGAAATGTTTTACata                                                                                               <  6:250962‑M1/58‑1 (MQ=255)
                                                        cTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAgtaaggtgcgaacaagtccctgatattagagcatgtttgtcatctggagccatag                                                                                              >  1:327094‑M1/1‑93 (MQ=255)
                                                         atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                                 <  6:36845‑M1/56‑1 (MQ=255)
                                                           aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa                                                                                                                                      <  5:293462‑M1/105‑16 (MQ=255)
                                                            ccGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCTGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag                                                                                         >  6:40134‑M1/1‑89 (MQ=255)
                                                              gTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                       <  5:228119‑M1/149‑63 (MQ=255)
                                                              gTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                       >  1:82883‑M1/1‑87 (MQ=255)
                                                                  agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                                                                   >  8:334449‑M1/80‑149 (MQ=255)
                                                                   taatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat                                                                                  <  5:97307‑M1/149‑68 (MQ=255)
                                                                   gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTg                                                                                  >  1:67537‑M1/79‑149 (MQ=255)
                                                                    aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGt                                                                                 <  3:254234‑M1/72‑1 (MQ=255)
                                                                    aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGt                                                                                 <  4:256445‑M1/72‑1 (MQ=255)
                                                                        atcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                             <  5:360431‑M1/149‑73 (MQ=255)
                                                                        atcTGCTATAAATAATCACGTTCATGCAATAACAGATAAGCTATTTTTAAACAGACACTTACCGCACATCATACTATggaaggggctaacaagtccctgatatgtgtttatgtttgtcatctggagccatagaacagggttcataatga                                                                             <  6:339502‑M1/149‑73 (MQ=255)
                                                                         atcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                            >  5:269958‑M1/73‑149 (MQ=255)
                                                                            gCTATAAATAATCACTTTCATCCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                                                                         >  3:153299‑M1/1‑73 (MQ=255)
                                                                             cTATAAATAATCACTTTCATGACATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacatggttcatcatgagtc                                                                          <  8:166368‑M1/147‑76 (MQ=255)
                                                                              ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                                       >  4:174004‑M1/68‑149 (MQ=255)
                                                                              ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                                       >  6:157584‑M1/68‑149 (MQ=255)
                                                                                 aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGaa                                                                    <  1:105736‑M1/85‑1 (MQ=255)
                                                                                  aataatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                                                                    <  3:76774‑M1/148‑82 (MQ=255)
                                                                                    catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCa                                                                 >  4:276922‑M1/62‑149 (MQ=255)
                                                                                     atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAg                                                                >  3:206922‑M1/61‑149 (MQ=255)
                                                                                       tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct                                                              >  1:126013‑M1/1‑62 (MQ=255)
                                                                                         aCTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                            >  1:389890‑M1/1‑60 (MQ=255)
                                                                                           tattgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACt                                                          >  5:239580‑M1/55‑149 (MQ=255)
                                                                                            aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTATCCACTTGTTTAATGCGGAGAATCAGTACACTa                                                         <  8:189189‑M1/96‑1 (MQ=255)
                                                                                             tCATGCAATACGAGATAAGCTATTTTTAAACAGACACTTACCGCCCAACAAACTAAggaaggtgcgaacaagtcgctgttatgagatcatgtttgtcatctggagccatagaacagggttcatcatgtgtcatcaacttaccttcgc                                                          <  2:41709‑M1/147‑92 (MQ=255)
                                                                                                aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTTATGAAATGTTTTACATATATTATCCAGTTGTTTAATGCTGTGAATCAGTACACTAtttt                                                     <  6:282460‑M1/100‑1 (MQ=255)
                                                                                                   aaTACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtg                                                  <  5:315613‑M1/149‑100 (MQ=255)
                                                                                                     actgagtcagcagagaagaatttccccgcttaatcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAAAGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTtat                                                >  2:381564‑M1/45‑149 (MQ=255)
                                                                                                         aGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                              >  3:278829‑M1/1‑44 (MQ=255)
                                                                                                             agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATCCAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAt                                        >  3:235720‑M1/37‑149 (MQ=255)
                                                                                                             agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACa                                         >  8:254494‑M1/37‑148 (MQ=255)
                                                                                                                 gagaagaatttccccgcttattcgcacattacATAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGa                                    >  1:271194‑M1/33‑149 (MQ=255)
                                                                                                                  agaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaa                                   >  3:84807‑M1/32‑149 (MQ=255)
                                                                                                                  aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                   >  7:281610‑M1/1‑35 (MQ=255)
                                                                                                                         tttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat                            <  7:343697‑M1/125‑1 (MQ=255)
                                                                                                                            aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac                         <  7:122520‑M1/149‑125 (MQ=255)
                                                                                                                              ccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAAAAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGTAGAATCAGTACACTAGTTTCTTATAATTACATTTGAAATTATATGAtcc                       <  6:227822‑M1/130‑2 (MQ=255)
                                                                                                                                gcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCAcc                     <  7:36585‑M1/132‑1 (MQ=255)
                                                                                                                                  ttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATc                        >  8:55735‑M1/16‑144 (MQ=255)
                                                                                                                                    aCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa                    >  7:273449‑M1/1‑17 (MQ=255)
                                                                                                                                     ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa                 >  7:31920‑M1/13‑148 (MQ=255)
                                                                                                                                     ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAg                >  8:348256‑M1/13‑149 (MQ=255)
                                                                                                                                       gCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga              <  5:42166‑M1/149‑136 (MQ=255)
                                                                                                                                        gcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGc                                                                          >  2:364486‑M1/10‑88 (MQ=255)
                                                                                                                                           ccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgattg          >  4:187916‑M1/7‑149 (MQ=255)
                                                                                                                                           aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                               >  3:118734‑M1/1‑10 (MQ=255)
                                                                                                                                           aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                               <  4:118734‑M1/64‑55 (MQ=255)
                                                                                                                                            acaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc         <  1:353328‑M1/149‑141 (MQ=255)
                                                                                                                                               ccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAGCACTTGTTTAATGCTGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgattgat        >  1:140102‑M1/3‑147 (MQ=255)
                                                                                                                                               aaCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttg      <  8:281610‑M1/149‑144 (MQ=255)
                                                                                                                                                aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                   <  3:318788‑M1/119‑115 (MQ=255)
                                                                                                                                                aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                   >  4:318788‑M1/1‑5 (MQ=255)
                                                                                                                                                 cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc    <  3:124889‑M1/149‑146 (MQ=255)
                                                                                                                                                  tAAggaatgtgcgaacaagtccctgatatgagatcatgtttgtcttctgtagccatagaacagggttcatcatgagtcatcaacttaccttcgcctacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc   <  6:243621‑M1/149‑147 (MQ=255)
                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatataacagggttcataatgagtcatcaacttaccttcgccgacagttaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc   >  7:380987‑M1/1‑3 (MQ=255)
                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatccacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc   >  5:105672‑M1/1‑3 (MQ=255)
                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc   >  2:9951‑M1/1‑3 (MQ=255)
                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                               >  4:354091‑M1/1‑3 (MQ=255)
                                                                                                                                                  tAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGattaat    >  5:372775/1‑148 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa                  <  6:81259‑M1/133‑132 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtccc  <  3:185433‑M1/148‑148 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtccc  <  3:317574‑M1/148‑148 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt            >  6:344756‑M1/1‑1 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt            <  5:344756‑M1/138‑138 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaaggccctgatatgagatcatgtttgtcatctggagccatagaccagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtccc  <  7:90236‑M1/148‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTA  >  NC_000913/1979341‑1979636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.