| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1243939 = | 17 (0.610) | 4 (0.150) | 4/224 | 3.1 | 17.1% | coding (589/735 nt) | ycgR | flagellar velocity braking protein, c‑di‑GMP‑regulated |
| ? | NC_000913 | 1243983 = | 23 (0.890) | coding (545/735 nt) | ycgR | flagellar velocity braking protein, c‑di‑GMP‑regulated | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTTTCACTTTGACGCCCAGTTAATCTCCATCAGCGAGCGCAAAGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1243986‑1243939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaagtgaAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAA > NC_000913/1243983‑1244092 TTTTTCACTTTGACGCCCAGTTAATCTCCATCAGCGAGCGCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGC < 5:86491/113‑1TTTTTCACTTTGACGCCCAGTTAATCTCCATCAGCGAGCGCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGC > 6:86491/1‑113 GACGCCCAGTTAATCTCCATCAGCGAGCGCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCTTTGCTGTTTCCAG < 5:30639/120‑1 GACGCCCAGTTAATCTCCATCAGCGAGCGCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCTTTGCTGTTTCCAG > 6:30639/1‑120 AAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAA > 5:966/1‑116 AAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAA < 6:966/116‑1 GTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGC < 5:37998/73‑1 GTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGC > 6:37998/1‑73 TTTTTCACTTTGACGCCCAGTTAATCTCCATCAGCGAGCGCAAAGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1243986‑1243939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaagtgaAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATGCGCCCATGCCGCCTAACGACAA > NC_000913/1243983‑1244092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |