| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2011761 | 108 (1.170) | 3 (0.030) | 3/248 | NT | 2.8% | pseudogene (280/678 nt) | yedN | pseudogene, IpaH/YopM family |
| ? | NC_000913 | = 2011775 | 108 (1.230) | pseudogene (266/678 nt) | yedN | pseudogene, IpaH/YopM family | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGCGATATCAGATTATTATCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2011609‑2011761‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctcTTCCATCCTGGATTGAGGTGCTTTATCTTCGTCATAATGGCCTTGCCACAATACAAATTCCCAAATTCTGCAAAGAATTAGAGCTCGATTTCAATAATTATATGGTATTTCCAAAAGTATCCGATGGAATTACCCAGGTCTCCG < NC_000913/2011775‑2011632 ACGCGATATCAGATTATTATCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCA > 1:156064/1‑149 GCGATATCAGATTATTATCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACC > 7:324217/1‑149 TCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACC < 7:363883/132‑1 TCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACC > 8:363883/1‑132 TAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACCTCTTCCATCCTGGATTGAGGTGCTTTATCTTCG < 7:158387/149‑1 TTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACCTCTTCCATCCTGGATTGAGGTGCTTTATCT > 3:291897/1‑130 TTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACCTCTTCCATCCTGGATTGAGGTGCTTTATCT < 4:291897/130‑1 ACCTCTTCCCTCCTGGATTGAGGTGCTTTATCTTCGTCATAATGGCCTTGCAACAATACAAATTCCCAAATTCTGCAAATAATTAGAGCTCGATTTCAATAATTATATGGTATTTCCAAAAGTATCCGATGTAATTACCCAGGTCTCCG < 6:56323/149‑1 CTCTTCCATCCTGGATTGAGGTGCTTTATCTTCGTCATAATGGCCTTGCCACAATACAAATTCCCAAATTCTGCAAAGAATTAGAGCTCGATTTCAATAATTATATGGTATTTCCAAAAGTATCCGATGGAATTACCCAGGTCTCCG > 7:145412/1‑147 ACGCGATATCAGATTATTATCTACGGAGACCTGGGTAATTCCATCGGATACTTTTGGAAATACCATATAATTATTGAAATCGAGCTCTAATTCTTTGCAGAATTTGGGAATTTGTATTGTGGCAAGGCCATTATGACGAAGATAAAGCACCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2011609‑2011761‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctcTTCCATCCTGGATTGAGGTGCTTTATCTTCGTCATAATGGCCTTGCCACAATACAAATTCCCAAATTCTGCAAAGAATTAGAGCTCGATTTCAATAATTATATGGTATTTCCAAAAGTATCCGATGGAATTACCCAGGTCTCCG < NC_000913/2011775‑2011632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |