New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 643502 =43 (1.090)10 (0.270) 9/244 2.9 20.4% intergenic (+176/+55) ybdR/rnk putative Zn‑dependent NAD(P)‑binding oxidoreductase/regulator of nucleoside diphosphate kinase
?NC_000913 643524 = 38 (1.030)intergenic (+198/+33) ybdR/rnk putative Zn‑dependent NAD(P)‑binding oxidoreductase/regulator of nucleoside diphosphate kinase

CCATGACGATAATCGCCGCCATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCAGTGAAT  >  NC_000913/643359‑643649
                                                                                                                                               |                                                                                                                                                   
ccATGACGATAATCGCCGCCATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGa                                                                                                                                                >  1:69637/1‑149 (MQ=255)
                 gccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTg                                                                                                                               <  4:151905/149‑1 (MQ=255)
                 gccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTg                                                                                                                               >  2:193702/1‑149 (MQ=255)
                 attcactgggcaattccgggcggcgttgcaacccaccttgaagtgcgggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATGCGAGTGCAtcctcgg                                                                                                                               >  4:97‑M1/127‑147 (MQ=255)
                 attcactgggaacttccgggcggcgttgcaacccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgccaAGAGGATGCGAGTGCATCCTCTg                                                                                                                               <  7:94114‑M1/23‑1 (MQ=255)
                  ccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGa                                                                                                                                           >  4:99137/1‑136 (MQ=255)
                  ccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGa                                                                                                                                           <  3:99137/136‑1 (MQ=255)
                  ccATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTgg                                                                                                                              <  8:109035/149‑1 (MQ=255)
                     tAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGc                                                                                                                            >  5:77760/1‑148 (MQ=255)
                       tgggaacttccgggcggcgttgcaacccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGAt                                                                                                                                               >  6:44228‑M1/121‑127 (MQ=255)
                       tgggaacttccgggcggcgttgcaacccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGAt                                                                                                                                               <  5:44228‑M1/7‑1 (MQ=255)
                        tCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCa                                                                                                                           >  7:148554/1‑146 (MQ=255)
                           aacttccgggcggcgttgcaacccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgccaAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGa                                                                                                                     >  8:94114‑M1/117‑149 (MQ=255)
                            aaaTCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAg                                                                                                                    <  6:77760/149‑1 (MQ=255)
                              ttccgggcggcgttgcaacccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATGCGAATGCATCCTCTg                                                                                                                               >  3:133798‑M1/114‑136 (MQ=255)
                              ttccgggcggcgttgcaacccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATGCGAATGCATCCTCTg                                                                                                                               <  4:133798‑M1/23‑1 (MQ=255)
                                  tATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCg                                                                                                              >  1:180050/1‑149 (MQ=255)
                                       ggATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTtgt                                                                                                         >  6:69501/1‑149 (MQ=255)
                                             aaaaTGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGa                                                                                                                     >  3:15073/1‑131 (MQ=255)
                                             aaaaTGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGa                                                                                                                     <  4:15073/131‑1 (MQ=255)
                                                cccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATg                                                                                                                                              >  1:172619‑M1/96‑103 (MQ=255)
                                                cccaccttgaagtgctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATg                                                                                                                                              <  2:172619‑M1/8‑1 (MQ=255)
                                                aTGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATggg                                                                                                <  2:69637/149‑1 (MQ=255)
                                                    ttCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGAtt                                                                                             >  2:99700/1‑148 (MQ=255)
                                                       tGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAg                                                                                         >  8:120009/1‑149 (MQ=255)
                                                         ccATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCa                                                                                       <  2:180050/149‑1 (MQ=255)
                                                           aTGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAgg                                                                                     <  1:99700/149‑1 (MQ=255)
                                                              ctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATgg                                                                                                 <  5:113969‑M1/53‑1 (MQ=255)
                                                              ctggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATgg                                                                                                 >  6:113969‑M1/82‑134 (MQ=255)
                                                               tggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATGCGAGTGCATCCTCTGGGCAAAGc                                                                                                                       <  1:174780‑M1/31‑1 (MQ=255)
                                                               tggaactcgaataccagccagaagctgctggcgactacctgctttaatcccatctgcacaagcgataactcgctttgcccAGAGGATGCGAGTGCATCCTCTGGGCAAAGc                                                                                                                       >  2:174780‑M1/81‑111 (MQ=255)
                                                                      cacaAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTa                                                                                                                 >  4:145065/1‑110 (MQ=255)
                                                                      cacaAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTa                                                                                                                 <  3:145065/110‑1 (MQ=255)
                                                                      cacaAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTACATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCcag                                                                           >  5:21040/1‑148 (MQ=255)
                                                                       acaAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCcag                                                                           >  2:27416/1‑147 (MQ=255)
                                                                         aaacgaaacgGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAg                                                                                                                                          >  5:62671/1‑82 (MQ=255)
                                                                         aaacgaaacgGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAg                                                                                                                                          <  6:62671/82‑1 (MQ=255)
                                                                           acgaaacgGAATAATTTTGCAGCAAAAGTGAACAGTGACAACCACGAAAAATTGCTCATTTTGCTTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGAGCAGAAGGGATTAAAGCAGGTAGTCGACAGCAGCtt                                                                     >  7:6127/1‑149 (MQ=255)
                                                                                              cagcaAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGtt                                                   <  5:69501/148‑1 (MQ=255)
                                                                                               agcaATAGTTTACAGTGAGTACGAGGATAATTTGCTGTTTTTGCGTATTGATGTTGGGAGTGCATCATCTGGGCAAAGCGAGTTATCGGTTGTGCAGATGTGTTTTATGCTGGTAGTCGCCAGCTGCTTCTGGGTTGTATTCGAGTTcc                                                 <  8:6127/149‑1 (MQ=255)
                                                                                                 caAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAg                                               <  7:120009/149‑1 (MQ=255)
                                                                                                    aaGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCcagca                                                                         >  7:79371/1‑120 (MQ=255)
                                                                                                    aaGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCcagca                                                                         <  8:79371/120‑1 (MQ=255)
                                                                                                              tcccatctgcacaagcgataactcgctttgcccAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTgg                                  <  4:138521‑M1/116‑1 (MQ=255)
                                                                                                              tGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTg                                                                                                                               <  2:38468/56‑1 (MQ=255)
                                                                                                              tGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTg                                                                                                                               >  1:38468/1‑56 (MQ=255)
                                                                                                                agaACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGt                                <  1:27416/149‑1 (MQ=255)
                                                                                                                 gaACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTgg                                  >  6:164339/1‑146 (MQ=255)
                                                                                                                 gaACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTgg                                  <  5:164339/146‑1 (MQ=255)
                                                                                                                 gaACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGtt                               >  1:179227/1‑149 (MQ=255)
                                                                                                                  aaCCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTctgg                                                                 <  8:13122/114‑1 (MQ=255)
                                                                                                                  aaCCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTctgg                                                                 >  7:13122/1‑114 (MQ=255)
                                                                                                                     cAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCaa                           >  1:2351/1‑149 (MQ=255)
                                                                                                                                gCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCgg                 >  6:125070/1‑148 (MQ=255)
                                                                                                                                         gCGTAAAGAGGATGCGAGTACATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCa        <  6:21040/148‑1 (MQ=255)
                                                                                                                                          cGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCAGt      <  2:2351/149‑1 (MQ=255)
                                                                                                                                              aaGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCAGTGAAt  <  1:193702/149‑1 (MQ=255)
                                                                                                                                               AGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGt                                                    <  6:87881‑M1/98‑1 (MQ=255)
                                                                                                                                               AGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGt                                                    >  5:87881‑M1/1‑98 (MQ=255)
                                                                                                                                               |                                                                                                                                                   
CCATGACGATAATCGCCGCCATAATCAGAAATCCTATCAGGATGTAAAATGCTTCTGCCATGGTTATTCCCACAAACGAAACGGAATAATTTTGCAGCAAAAGTGAACAGTGAGAACCAGGAAAAATTGCTGATTTTGCGTAAAGAGGATGCGAGTGCATCCTCTGGGCAAAGCGAGTTATCGCTTGTGCAGATGGGATTAAAGCAGGTAGTCGCCAGCAGCTTCTGGCTGGTATTCGAGTTCCAGCACTTCAAGGTGGGTTGCAACGCCGCCCGGAAGTTCCCAGTGAAT  >  NC_000913/643359‑643649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.