New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2600973	38 (1.140)	6 (0.190)	6/246	2.9	14.1%	intergenic (+25/‑228)	bcp/hyfA	peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit
	?	NC_000913	= 2600983	37 (1.180)					intergenic (+35/‑218)	bcp/hyfA	peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit
Rejected: Frequency below/above cutoff threshold.

CCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAAT  >  NC_000913/2600849‑2601125                                                                                                                                       |                                                                                                                                               ccTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCa                                                                                                                                  >  2:16511/1‑149 (MQ=255)  cTGATTGACGCTGATGGCAAAATCGAACATGTCTTCGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCa                                                                                                                                  <  3:89000/148‑1 (MQ=255)       tGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTtctc                                                                                                                            >  3:129485/1‑149 (MQ=255)                   cAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGAt                                                                                                                 >  7:95026/1‑148 (MQ=255)                   cAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATc                                                                                                                <  1:16511/149‑1 (MQ=255)                               tGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCtt                                                                                                    >  4:6019/1‑149 (MQ=255)                                  cTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTcc                                                                                                 <  3:6019/149‑1 (MQ=255)                                       aCGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGc                                                                                            <  4:129485/149‑1 (MQ=255)                                               aaaaCCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCAc                                                                                                                                 <  2:143910/104‑1 (MQ=255)                                               aaaaCCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCAc                                                                                                                                 >  1:143910/1‑104 (MQ=255)                                                 aaCCAGCAATCACCACGACGATGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGgtg                                                                                  >  2:43853/1‑149 (MQ=255)                                                    cAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCaa                                                                                                                    >  8:28569/1‑112 (MQ=255)                                                    cAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCaa                                                                                                                    <  7:28569/112‑1 (MQ=255)                                                            accacGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTtctc                                                                                                                            >  4:104276/1‑96 (MQ=255)                                                            accacGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTtctc                                                                                                                            <  3:104276/96‑1 (MQ=255)                                                                    gTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCt                                                                >  6:136018/1‑148 (MQ=255)                                                                       gtgCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCAttt                                                                      >  2:5337/1‑139 (MQ=255)                                                                       gtgCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCAttt                                                                      <  1:5337/139‑1 (MQ=255)                                                                            gAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACgg                                                                                     >  8:115123/1‑119 (MQ=255)                                                                            gAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACgg                                                                                     <  7:115123/119‑1 (MQ=255)                                                                             aaCTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAAt                                                      <  1:154121/149‑1 (MQ=255)                                                                               cTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGgccagcacggaatggagcaaagtaatcaggcgtgttctttcagccagttcagcacaacgtcgtggtgattgctggttttgaaatcgtca                                                       <  6:116834‑M2/146‑90 (MQ=255)                                                                                      aaaGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCCGAACGTTAATGACcatcat                                             >  6:6402/1‑149 (MQ=255)                                                                                          aaCACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATtctc                                                                                                        >  4:64413/1‑86 (MQ=255)                                                                                          aaCACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATtctc                                                                                                        <  3:64413/86‑1 (MQ=255)                                                                                          aaCACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCAttttt                                         >  8:8679/1‑149 (MQ=255)                                                                                                      tACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTa                                      <  3:109108/140‑1 (MQ=255)                                                                                                      tACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTa                                      >  4:109108/1‑140 (MQ=255)                                                                                                        cTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGgccagcacggaatggagcaaagtaatcaggcgtgttctttcagccagttcagcacaacgtcgtggtgattgctggttttgaaatcgtcaaagacatgttcgattttgccatcagcg                            >  5:116834‑M2/1‑32 (MQ=255)                                                                                                           tGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATc                          <  5:136018/147‑1 (MQ=255)                                                                                                               ccATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGacaccc                                                                                     >  6:106482/1‑82 (MQ=255)                                                                                                               ccATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGacaccc                                                                                     <  5:106482/84‑3 (MQ=255)                                                                                                                cATTCCGTGCTGGCTGCGCTTGCGgccagcacggaatggagcaaagtaatcaggcgtgttctttcagc                                                                                                    >  4:46673‑M2/1‑24 (MQ=255)                                                                                                                cATTCCGTGCTGGCTGCGCTTGCGgccagcacggaatggagcaaagtaatcaggcgtgttctttcagc                                                                                                    <  3:46673‑M2/68‑45 (MQ=255)                                                                                                                 aTTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCCGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAAt                  <  5:6402/149‑1 (MQ=255)                                                                                                                  ttCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAAt                  <  7:85419/148‑1 (MQ=255)                                                                                                                  ttCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAAt                  >  8:85419/1‑148 (MQ=255)                                                                                                                            gctgCGCTTGCGgccagcacggaatggagcaaagtaatcaggcgtgttctttcagccagttcagcacaacgtcgtggtgattgctggttttgaaatcgtcaaagacatgttcgattttgccatcagcgtcaatcaggaagc               <  5:130144‑M2/141‑130 (MQ=255)                                                                                                                            gctgCGCTTGCGgccagcacggaatggagcaaagtaatcaggcgtgttctttcagccagttcagcacaacgtcgtggtgattgctggttttgaaatcgtcaaagacatgttcgattttgccatcagcgtcaatcaggaagc               >  6:130144‑M2/1‑12 (MQ=255)                                                                                                                            gctgCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAAt                  <  7:117447/138‑1 (MQ=255)                                                                                                                            gctgCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAAt                  >  8:117447/1‑138 (MQ=255)                                                                                                                            gctgCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTAt       >  6:139699/1‑149 (MQ=255)                                                                                                                                 gcTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAat  <  5:139699/149‑1 (MQ=255)                                                                                                                                       |                                                                                                                                               CCTGATTGACGCTGATGGCAAAATCGAACATGTCTTTGACGATTTCAAAACCAGCAATCACCACGACGTTGTGCTGAACTGGCTGAAAGAACACGCCTGATTACTTTGCTCCATTCCGTGCTGGCTGCGCTTGCGGCCAGCATACCTCACTTCTCGTGATCAAGATCACATTCTCGCTTTCCCCTGCGACACGGGTGTCGAATCCATTTTTTGCTGAACGTTAATGACCATCATTTTTGTACCGTTCAGAATCCAGTTAATACATAACTTATTGAAT  >  NC_000913/2600849‑2601125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.