breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT31.6% 106.4 / 78.4 96intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 52 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4542682 =215 (2.230)22 (0.240) 21/264 4.1 9.9% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 199 (2.200)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 4542690216 (2.240)17 (0.190) 17/264 4.9 7.8% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 198 (2.190)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 120780533 (0.340)12 (0.140) 11/250 6.2 20.5% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 64 (0.750)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 1207790 =43 (0.450)7 (0.080) 7/250 7.7 11.9% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 65 (0.760)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 9209213 (2.210)7 (0.080) 7/260 7.9 3.5% intergenic (+18/‑97) talB/mog transaldolase B/molybdochelatase incorporating molybdenum into molybdopterin
?NC_000913 = 9215 184 (2.070)intergenic (+24/‑91) talB/mog transaldolase B/molybdochelatase incorporating molybdenum into molybdopterin
* ? NC_000913 722407 =70 (0.730)7 (0.080) 7/266 8.0 9.3% coding (2008/2685 nt) kdpD fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein
?NC_000913 722473 = 70 (0.770)coding (1942/2685 nt) kdpD fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein
* ? NC_000913 = 3427065NA (NA)6 (0.070) 6/264 8.4 NA intergenic (‑32/+11) alaU/ileU tRNA‑Ala/tRNA‑Ile
?NC_000913 = 3427068 NA (NA)intergenic (‑35/+8) alaU/ileU tRNA‑Ala/tRNA‑Ile
* ? NC_000913 = 381689NA (NA)6 (0.070) 6/264 8.4 NA noncoding (430/1331 nt) IS2 repeat region
?NC_000913 = 381743 NA (NA)noncoding (484/1331 nt) IS2 repeat region
* ? NC_000913 225456 =28 (0.290)6 (0.070) 6/264 8.4 18.6% noncoding (76/77 nt) ileV tRNA‑Ile
?NC_000913 = 3427056 NA (NA)intergenic (‑23/+20) alaU/ileU tRNA‑Ala/tRNA‑Ile
* ? NC_000913 = 2643100101 (1.050)5 (0.060) 5/254 8.7 5.3% intergenic (‑256/+29) rodZ/rlmN MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent
?NC_000913 = 2643110 89 (1.020)intergenic (‑266/+19) rodZ/rlmN MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent