breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913757,2800GT27.3% 31.2 / 12.2 22A458A (GCG→GCTsdhAsuccinate dehydrogenase, flavoprotein subunit
*NC_0009134,283,2310GT25.0% 55.8 / 14.0 28intergenic (‑156/+22)yjcF/actPpentapeptide repeats protein/acetate transporter
*NC_0009134,283,2320AC25.0% 36.3 / 15.4 28intergenic (‑157/+21)yjcF/actPpentapeptide repeats protein/acetate transporter
*NC_0009134,283,2330CT25.0% 44.3 / 14.2 28intergenic (‑158/+20)yjcF/actPpentapeptide repeats protein/acetate transporter
*NC_0009134,296,0600CT23.5% 61.8 / 15.6 34intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009134,283,2300AG23.3% 51.3 / 13.6 30intergenic (‑155/+23)yjcF/actPpentapeptide repeats protein/acetate transporter
*NC_0009131,799,3700A.23.1% 99.2 / 28.0 40intergenic (‑100/+23)pheM/rplTphenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
*NC_0009131,799,3741.T22.5% 87.4 / 38.2 40intergenic (‑104/+19)pheM/rplTphenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
*NC_0009132,960,9260GC21.4% 64.3 / 12.1 28G501G (GGC→GGG) ‡recCexonuclease V (RecBCD complex), gamma chain
*NC_0009132,960,9280CG21.4% 63.2 / 12.4 28G501R (GGC→CGC) ‡recCexonuclease V (RecBCD complex), gamma chain
*NC_0009132,960,9300GC20.7% 67.0 / 13.5 29S500C (TCC→TGC) recCexonuclease V (RecBCD complex), gamma chain
*NC_0009132,497,0240TG20.6% 60.8 / 16.4 34intergenic (+32/+33)ypdK/alaCinner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
*NC_0009132,497,0250CA20.6% 77.8 / 12.5 34intergenic (+33/+32)ypdK/alaCinner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
*NC_000913508,7450TG20.0% 61.7 / 10.7 30intergenic (+186/+130)ybaQ/copAputative DNA‑binding transcriptional regulator/copper transporter

Marginal new junction evidence (lowest skew 10 of 45 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4542682 =49 (1.340)10 (0.290) 10/244 2.1 14.2% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 75 (2.200)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 454269049 (1.340)8 (0.230) 8/244 2.6 11.7% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 75 (2.200)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 2171428NA (NA)6 (0.160) 6/262 3.3 13.3% noncoding (1258/1258 nt) IS3 repeat region
?NC_000913 = 3771711 39 (1.060)coding (34/363 nt) yibI DUF3302 family inner membrane protein
* ? NC_000913 4555361 =72 (1.960)6 (0.180) 5/242 3.4 8.0% intergenic (+12/+129) uxuR/yjiC fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
?NC_000913 4555390 = 71 (2.100)intergenic (+41/+100) uxuR/yjiC fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
* ? NC_000913 292971 =70 (1.910)5 (0.150) 5/246 3.4 7.1% intergenic (‑23/+249) yagK/yagL CP4‑6 prophage; conserved protein/CP4‑6 prophage; DNA‑binding protein
?NC_000913 292992 = 66 (1.920)intergenic (‑44/+228) yagK/yagL CP4‑6 prophage; conserved protein/CP4‑6 prophage; DNA‑binding protein
* ? NC_000913 274620 =NA (NA)8 (0.230) 5/244 3.4 NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 455159168 (1.850)5 (0.140) 5/248 3.5 6.9% intergenic (‑295/‑45) gntP/uxuA fructuronate transporter/mannonate hydrolase
?NC_000913 = 4551606 71 (2.050)intergenic (‑310/‑30) gntP/uxuA fructuronate transporter/mannonate hydrolase
* ? NC_000913 = 452433362 (1.690)5 (0.140) 5/250 3.5 8.3% coding (678/906 nt) yjhH putative lyase/synthase
?NC_000913 = 4524375 51 (1.460)coding (636/906 nt) yjhH putative lyase/synthase
* ? NC_000913 = 37996336 (0.980)5 (0.140) 5/256 3.6 14.2% intergenic (‑82/+106) frmR/yaiO regulator protein that represses frmRAB operon/outer membrane protein
?NC_000913 = 379983 25 (0.700)intergenic (‑102/+86) frmR/yaiO regulator protein that represses frmRAB operon/outer membrane protein
* ? NC_000913 = 419888638 (1.040)4 (0.120) 4/248 3.8 11.3% coding (97/672 nt) nfi endonuclease V; deoxyinosine 3' endonuclease
?NC_000913 = 4198928 27 (0.780)coding (139/672 nt) nfi endonuclease V; deoxyinosine 3' endonuclease