New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4426579 =135 (1.490)6 (0.070) 6/218 NT 4.9% intergenic (+22/+49) rplI/yjfZ 50S ribosomal subunit protein L9/uncharacterized protein
?NC_000913 4426606 = 112 (1.380)intergenic (+49/+22) rplI/yjfZ 50S ribosomal subunit protein L9/uncharacterized protein
Rejected: Frequency below/above cutoff threshold.

AGTGCCGCAGGAGCGAGACATCAGTTGCGCTCGTATGTATCTAACGCCAGCAAACCATCCTGACTTATGGACACAAGAGAATGGTGAATGGATCTACTTGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4426736‑4426579
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcggcgttttGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGATACATACGAGCGCAACTGATGTCTCGCTCCTGCGGCACTCGCTCGAAACCCAA  >  NC_000913/4426606‑4426750
                                                                                                                                                                                                                                                                                                               
AGTGCCGCAGGAGCGAGACATCAGTTGCGCTCGTATGTATCTAACGCCAGTAAACCATACTGACTTATGGACACAAGATAATGGTTAATGGATCTACTTGAGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGG                                                                                                                                                             <  3:105485/148‑1
         GGAGCGAGACATCAGTTGCGCTCGTATGTATCTAACGCCAGCAAACCATCCTGACTTATGGACACAAGAGAATGGTGAATGGATCTACTTGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTTT                                                                                                                                                    >  1:307528/1‑148
           AGCGAGACATCAGTTGCGCTCGTATGTATCTAACGCCAGCAAACCATCCTGACTTATGGACACAAGAGAATGGTGAATGGATCTACTTGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTTTT                                                                                                                                                   >  4:44982/1‑147
                    TCAGTTGCGCTCGTATGTATCTAACGCCAGCAAACCATCCTGACTTATGGACACAAGAGAATGGTGAATGGATCTACTTGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTTTTGCTTTCTATT                                                                                                                                         >  3:232574/1‑148
                                        CTAACGCCAGCAAACCATCCTGACTTATGGACACAAGAGAATGGTGAATGGATCTACTTGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTC                                                                                                                                                           >  8:59582/1‑110
                                        CTAACGCCAGCAAACCATCCTGACTTATGGACACAAGAGAATGGTGAATGGATCTACTTGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTC                                                                                                                                                           <  7:59582/110‑1
                                                                     GACACAAGAGAATGGTGAAGGTATCTACTTGAGAAACTAATACCTGACTAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTTTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCT                                                                                           <  4:232574/145‑1
                                                                                            TCTACTTGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTT                                                                                                                                                     <  4:304371/64‑1
                                                                                            TCTACTTGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTT                                                                                                                                                     >  3:304371/1‑64
                                                                                                  TGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTTTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATG                                                                       >  4:201609/1‑136
                                                                                                  TGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTTTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATG                                                                       <  3:201609/136‑1
                                                                                                                                  CAAAACGCCGACCAATGGTCGGCGTTTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTT                                                          >  4:110112/1‑117
                                                                                                                                  CAAAACGCCGACCAATGGTCGGCGTTTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTT                                                          <  3:110112/117‑1
                                                                                                                                                  GGTCGGCGTTTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATA                                                                                 <  6:39075/78‑1
                                                                                                                                                  GGTCGGCGTTTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATA                                                                                 >  5:39075/1‑78
                                                                                                                                                    TCGGCGTTTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGATACATACGAGCGCAACTGATGTCTCGCTCCTGCGGCACTCGCTCG          >  4:256258/1‑147
                                                                                                                                                      GGCGTTTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGATACATACGAGCGCAACTGATGTCTCGCTCCTGCGGCACTCGCTCGAA        <  3:206946/147‑1
                                                                                                                                                           TTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGATACATACGAGCGCAACTGATGTCTCGCTCCTGCGGCACTCGCTCGAAAACCA   >  2:250619/1‑147
                                                                                                                                                           TTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGATACATACGAGCGCAACTGATGTCTCGCTCCTGCGGCACTCGCT            >  3:42229/1‑138
                                                                                                                                                           TTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGATACATACGAGCGCAACTGATGTCTCGCTCCTGCGGCACTCGCT            <  4:42229/138‑1
                                                                                                                                                           TTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGAT                                                      >  7:342381/1‑96
                                                                                                                                                           TTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGAT                                                      <  8:342381/96‑1
                                                                                                                                                           TTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGG                                                                      >  1:169878/1‑80
                                                                                                                                                           TTTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGG                                                                      <  2:169878/80‑1
                                                                                                                                                            TTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGATACATACGAGCGCAACTGATGTCTCGCTCCTGCGGCACTCGCTCGAAACCCAA  <  1:250619/147‑1
                                                                                                                                                            TTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCA                                                                                                    >  5:141008/1‑49
                                                                                                                                                            TTGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCA                                                                                                    <  6:141008/49‑1
                                                                                                                                                                                                                                                                                                               
AGTGCCGCAGGAGCGAGACATCAGTTGCGCTCGTATGTATCTAACGCCAGCAAACCATCCTGACTTATGGACACAAGAGAATGGTGAATGGATCTACTTGCGAAACTAATACCTGACGAAAAATAGAAAGCAAAACGCCGACCAATGGTCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4426736‑4426579
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcggcgttttGCTTTCTATTTTTCGTCAGGTATTAGTTTCGCAAGTAGATCCATTCACCATTCTCTTGTGTCCATAAGTCAGGATGGTTTGCTGGCGTTAGATACATACGAGCGCAACTGATGTCTCGCTCCTGCGGCACTCGCTCGAAACCCAA  >  NC_000913/4426606‑4426750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.