| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2518010 = | 110 (1.210) | 4 (0.040) +GG |
4/240 | NT | 5.0% | intergenic (‑178/+31) | yfeA/alaX | putative diguanylate cyclase/tRNA‑Ala |
| ? | NC_000913 | 2518151 = | 44 (0.480) | intergenic (‑35/+5) | alaX/alaW | tRNA‑Ala/tRNA‑Ala | |||||
AAAACCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATGAATTCCGCCCGAATGTGTCAACGGCA > NC_000913/2518008‑2518297 | aaaaCCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAAtt < 4:142690/148‑1 (MQ=255)aaaaCCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCGCTCCCAGCTGCGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAAtt < 2:244169/148‑1 (MQ=255) aaaCCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAAttt < 2:99811/148‑1 (MQ=255) aaCCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTtg < 8:149479/148‑1 (MQ=255) cccccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTtggt < 1:298629/148‑1 (MQ=255) ccGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGa < 3:152293/148‑1 (MQ=255) ttGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAAttt > 3:320848/1‑137 (MQ=255) ttGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAAttt < 4:320848/137‑1 (MQ=255) aTTTGGTGGAGCTAAGCGGGCTCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCGACGATTCTTTTACGTACAAAGTTTGGTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGa < 7:273207/148‑1 (MQ=21) aaGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCg > 7:66235/1‑131 (MQ=255) aaGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCg < 8:66235/131‑1 (MQ=255) tCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGaa < 1:345954/120‑1 (MQ=255) tCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGaa > 2:345954/1‑120 (MQ=255) cGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGAt > 2:141350/1‑115 (MQ=255) cGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGAt < 1:141350/115‑1 (MQ=255) aaCCGCTGACCTCTTGAATGCCATGCATGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGA‑TTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCtt > 1:333519/1‑130 (MQ=255) tGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCCCGAGGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGCGCTAAGCGGGATCGACCCGCTGACCTCTTGCATGCCCTGCAAGCGCTCTGCCCGCTGCGCt > 5:165453/1‑148 (MQ=37) ccatgcAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGAACTCTTGCATGCCATCCAAGCGCTATCCCAGCTGAGCTATAGcc > 1:48710/1‑148 (MQ=255) gcAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGc < 2:372314/108‑1 (MQ=255) gcAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGc > 1:372314/1‑108 (MQ=255) ccAGCTGAGCTATAGCCCCGACAAGGATTTAGGTACGAA‑TTTACGGGCGTGAAAAATTTGATGGAGCTAAAATGTATCGAACCGAAAAACACAAGCATCCGATGAACGAGCTCTACCAGATGAGCTAAAGCCCCGTGAAGTAAAGCtt > 8:205431/1‑148 (MQ=255) cAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGaa < 8:151931/80‑1 (MQ=255) cAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGaa > 7:151931/1‑80 (MQ=255) cAGCTGAGCTATAGCCCCACGATGCGATTCCGTACCAAGTTAGCTGG‑GTGCAAAATTTGGTGGAGCAAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCCCGAAAAGCTTg > 6:145658/1‑148 (MQ=21) ttgCCCCACGATGCGTTTTCGTACCTAGTTTGCTGG‑GTGCAAAATTTGGTGGTGCTAAGGGGGATCGATCCGCTGACCTCTTGCTTGGCATGCATGCGGGCTCCCAGCTGAGCTATTGCCGCGTCAGGTAAAGCTTGTCGAGTTGACg < 1:373925/146‑1 (MQ=255) ccccACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCaa < 8:87983/92‑1 (MQ=255) ccccACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCaa > 7:87983/1‑92 (MQ=255) cccACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACctct > 2:394798/1‑77 (MQ=255) cccACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACctct < 1:394798/77‑1 (MQ=255) aatttccaaccctcgctgcaaagcgggggttggAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAg < 3:306824‑M2/66‑1 (MQ=255) aatttccaaccctcgctgcaaagcgggggttggAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAg > 4:306824‑M2/34‑99 (MQ=255) tttACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATg > 2:112256/1‑147 (MQ=255) tttACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATg > 7:190028/1‑147 (MQ=255) tttACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATg > 6:354406/1‑147 (MQ=255) tttACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATGa < 1:112256/148‑1 (MQ=255) tttACCGACCAAGTCTGCTTG‑GGGCAAAATTAGCTGGAGCTCCTCGGGAGCCAACCGCTGACCTCATCCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATGa < 5:5718/148‑1 (MQ=21) ttACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTc < 7:414229/109‑1 (MQ=255) ttACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTc > 8:414229/1‑109 (MQ=255) ccctcgctgcaaagcgggggttgtAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACct < 6:9884‑M2/38‑1 (MQ=255) ccctcgctgcaaagcgggggttggAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACct > 5:9884‑M2/25‑62 (MQ=255) cGTACCAAGATTGCTTG‑GTTCAAAATTTGGTGGAGCTAAGCGGGATCGATCCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATGAATTc < 6:165453/148‑1 (MQ=255) tACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATGAATTCCg > 2:119434/1‑148 (MQ=255) aaGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGcat < 7:244561/131‑1 (MQ=255) aaGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGcat > 8:244561/1‑131 (MQ=255) aaGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCAGCATATGAATTCCGccc > 4:255975/1‑147 (MQ=255) tttGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGcatgccatgc > 6:183636/1‑65 (MQ=255) tttGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGcatgccatgc < 5:183636/65‑1 (MQ=255) gg‑gTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATGAATTCCGCCCGAATGTGTc > 8:55141/1‑147 (MQ=255) g‑gTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATGAATTCCGCCCGa < 7:212850/139‑1 (MQ=255) g‑gTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATGAATTCCGCCCGa > 8:212850/1‑139 (MQ=255) tggAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGGCACGAAAAGCATTTCGAGTTGACGGGCGGCATCATATGAATTCCGCACCACTGTGTCaaccg > 4:323136‑M2/4‑146 (MQ=255) aaaTTTGGTGGAGCTAAGCGGGATCGAACCGCTGCCCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTGGTCGAGTTGACGGGCGGCATCATATGAATTCCGCCCGAATGTGTCTACGGCa > 2:189531/1‑147 (MQ=255) | AAAACCCCCGCTTTGCAGCGAGGGTTGGAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCACGATGCGTTTACGTACCAAGTTTGCTGG‑GTGCAAAATTTGGTGGAGCTAAGCGGGATCGAACCGCTGACCTCTTGCATGCCATGCAAGCGCTCTCCCAGCTGAGCTATAGCCCCGTCACGTAAAGCTTGTCGAGTTGACGGGCGGCATCATATGAATTCCGCCCGAATGTGTCAACGGCA > NC_000913/2518008‑2518297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |