breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT30.6% 128.1 / 78.0 98intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 20 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780550 (0.510)13 (0.150) 13/250 5.6 22.2% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 47 (0.540)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 1207790 =57 (0.580)13 (0.150) 12/250 5.9 20.9% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 48 (0.550)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 4542690118 (1.210)7 (0.080) 7/264 8.0 5.0% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 154 (1.680)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 4542682 =123 (1.260)6 (0.070) 6/264 8.4 4.3% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 155 (1.690)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 1159325 =89 (0.910)8 (0.090) 6/262 8.4 8.8% intergenic (+23/+37) ptsG/fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
?NC_000913 1159347 = 84 (0.920)intergenic (+45/+15) ptsG/fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
* ? NC_000913 = 353449697 (0.990)6 (0.070) 5/260 8.8 6.1% intergenic (+56/+20) pck/envZ phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR
?NC_000913 = 3534502 94 (1.040)intergenic (+62/+14) pck/envZ phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR
* ? NC_000913 2729475 =63 (0.640)5 (0.060) 5/262 8.9 7.8% intergenic (‑31/+141) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
?NC_000913 = 4168363 59 (0.650)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 2729443 =57 (0.580)5 (0.060) 5/262 8.9 8.6% noncoding (2/76 nt) gltW tRNA‑Glu
?NC_000913 2729485 = 53 (0.580)intergenic (‑41/+131) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
* ? NC_000913 = 201739862 (0.630)6 (0.060) 5/270 9.0 9.5% coding (845/1374 nt) fliI flagellum‑specific ATP synthase
?NC_000913 = 2017406 55 (0.590)coding (853/1374 nt) fliI flagellum‑specific ATP synthase
* ? NC_000913 = 416834178 (0.800)5 (0.060) 4/262 9.4 7.1% intergenic (+141/‑31) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 = 4168363 59 (0.650)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu