breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT43.5% 43.0 / 103.2 86intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 53 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780542 (0.470)17 (0.220) 17/248 3.7 32.6% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 33 (0.420)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 4542682 =59 (0.660)9 (0.110) 9/262 5.9 10.3% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 101 (1.210)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 275149NA (NA)7 (0.080) 7/278 6.9 7.1% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 451381 = 91 (1.030)coding (230/948 nt) cyoA cytochrome o ubiquinol oxidase subunit II
* ? NC_000913 273955 =NA (NA)7 (0.080) 7/280 6.9 7.5% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 451384 86 (0.960)coding (227/948 nt) cyoA cytochrome o ubiquinol oxidase subunit II
* ? NC_000913 3993706 =120 (1.350)6 (0.070) 6/266 7.1 5.5% intergenic (+7/+33) cyaA/cyaY adenylate cyclase/iron‑dependent inhibitor of iron‑sulfur cluster formation; frataxin; iron‑binding and oxidizing protein
?NC_000913 3993732 = 91 (1.070)intergenic (+33/+7) cyaA/cyaY adenylate cyclase/iron‑dependent inhibitor of iron‑sulfur cluster formation; frataxin; iron‑binding and oxidizing protein
* ? NC_000913 483821 =103 (1.160)6 (0.070) 6/266 7.1 6.4% coding (583/3150 nt) acrB multidrug efflux system protein
?NC_000913 483883 = 79 (0.930)coding (521/3150 nt) acrB multidrug efflux system protein
* ? NC_000913 105361 =163 (1.830)4 (0.050) 4/256 7.8 2.6% coding (57/1152 nt) ftsZ GTP‑binding tubulin‑like cell division protein
?NC_000913 = 105357 152 (1.870)coding (53/1152 nt) ftsZ GTP‑binding tubulin‑like cell division protein
* ? NC_000913 274620 =NA (NA)6 (0.070) 4/262 7.9 NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 4094343 =NA (NA)4 (0.050) 4/266 8.0 4.0% noncoding (28/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
?NC_000913 4094603 = 97 (1.150)noncoding (288/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
* ? NC_000913 4094343 =NA (NA)4 (0.050) 4/266 8.0 4.5% noncoding (28/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
?NC_000913 4094511 = 84 (0.990)noncoding (196/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences