breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT35.7% 45.7 / 39.9 42intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009131,388,2850AG21.4% 78.6 / 18.3 42intergenic (+24/+20)tyrR/tpxaromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
*NC_0009131,388,2830CT20.4% 91.3 / 18.6 44intergenic (+22/+22)tyrR/tpxaromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
*NC_0009131,388,2840AT20.4% 88.3 / 20.1 44intergenic (+23/+21)tyrR/tpxaromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase

Marginal new junction evidence (lowest skew 10 of 114 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2118562 =20 (0.470)8 (0.200) 8/228 3.3 28.1% noncoding (97/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 2118594 = 22 (0.540)noncoding (129/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 = 3943635NA (NA)7 (0.170) 7/228 3.6 15.7% intergenic (+125/‑69) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 4037446 40 (0.930)intergenic (+111/‑73) alaT/rrlA tRNA‑Ala/23S ribosomal RNA of rrnA operon
* ? NC_000913 = 33991138 (0.880)7 (0.170) 7/228 3.6 16.5% noncoding (155/358 nt) REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 = 339922 35 (0.860)noncoding (166/358 nt) REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 = 33983622 (0.510)7 (0.170) 7/228 3.6 20.4% noncoding (80/358 nt) REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 = 339904 34 (0.840)noncoding (148/358 nt) REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
* ? NC_000913 = 421984745 (1.050)6 (0.150) 6/218 3.8 13.4% coding (1252/1737 nt) aceK isocitrate dehydrogenase kinase/phosphatase
?NC_000913 = 4219854 37 (0.960)coding (1259/1737 nt) aceK isocitrate dehydrogenase kinase/phosphatase
* ? NC_000913 781813 =38 (0.880)6 (0.150) 6/220 3.8 13.1% intergenic (+161/‑272) lysQ/nadA tRNA‑Lys/quinolinate synthase, subunit A
?NC_000913 781840 = 45 (1.150)intergenic (+188/‑245) lysQ/nadA tRNA‑Lys/quinolinate synthase, subunit A
* ? NC_000913 3423376 =66 (1.540)10 (0.250)
+TTGATGT
6/228 3.9 16.1% intergenic (+182/+47) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 = 4213155 45 (1.050)noncoding (116/120 nt) rrfE 5S ribosomal RNA of rrnE operon
* ? NC_000913 3423376 =66 (1.540)10 (0.250)
+TTGATGT
6/228 3.9 23.3% intergenic (+182/+47) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 = 3946815 4 (0.090)noncoding (116/120 nt) rrfC 5S ribosomal RNA of rrnC operon
* ? NC_000913 3423376 =66 (1.540)10 (0.250)
+TTGATGT
6/228 3.9 13.9% intergenic (+182/+47) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 3423672 = NA (NA)noncoding (116/120 nt) rrfD 5S ribosomal RNA of rrnD operon
* ? NC_000913 2118466 =NA (NA)6 (0.150) 6/228 3.9 21.4% noncoding (1/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 2118594 = 22 (0.540)noncoding (129/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences