New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3783137 = | 24 (0.800) | 4 (0.140) | 4/208 | 2.9 | 18.0% | coding (525/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
? | NC_000913 | 3783176 = | 14 (0.500) | coding (486/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) | |||||
Rejected: Frequency below/above cutoff threshold. |
GACCTTTGCCGATGATCTCCAGCAGCTGCTGCACTGCGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3783179‑3783137 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaaaGGTCTGATCGGTCGAGGCCAGCGAAATAGCTGTCGGTAAACCTGCCGCCAGTTCTTTCGCAAACGTTGGGCCAGAGATAACCGCCAGCGGAATTTGA > NC_000913/3783176‑3783272 GACCTTTGCCGATGATCTCCAGCAGCTGCTGCACTGCGGCAAAGGTCTGATCGGTCGAGGCCAGCGAAATAGCTGTCG > 5:4689/1‑78 GACCTTTGCCGATGATCTCCAGCAGCTGCTGCACTGCGGCAAAGGTCTGATCGGTCGAGGCCAGCGAAATAGCTGTCG < 6:4689/78‑1 TTTGCCGATGATCTCCAGCAGCTGCTGCACTGCGGCAAAGGTCTGATCGGTCGAGGCCAGCGAAATAGCTGTCGGTAAACCTGCCGCCAGTTCTTTCGCAAACGTTGGGCCAGAGATAACCGCCAGCGGAATTTGA < 3:81910/136‑1 TTTGCCGATGATCTCCAGCAGCTGCTGCACTGCGGCAAAGGTCTGATCGGTCGAGGCCAGCGAAATAGCTGTCGGTAAACCTGCCGCCAGTTCTTTCGCAAACGTTGGGCCAGAGATAACCGCCAGCGGAATTTGA > 4:81910/1‑136 CAAAGGTCTGATCGGTCGAGGCCAGCGAAATAGCTGTCGGTAAACCTGCCGCCAGTTCTTTCGCAAACGTTGGG > 4:64056/1‑74 GACCTTTGCCGATGATCTCCAGCAGCTGCTGCACTGCGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3783179‑3783137 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaaaGGTCTGATCGGTCGAGGCCAGCGAAATAGCTGTCGGTAAACCTGCCGCCAGTTCTTTCGCAAACGTTGGGCCAGAGATAACCGCCAGCGGAATTTGA > NC_000913/3783176‑3783272 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |