New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4621634 =	36 (1.200)	4 (0.150)	4/202	2.9	11.5%	intergenic (+32/‑135)	deoD/yjjJ	purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase
	?	NC_000913	4621662 =	29 (1.060)					intergenic (+60/‑107)	deoD/yjjJ	purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase
Rejected: Frequency below/above cutoff threshold.

ATCAGTCAGCTCGCTCATTAATGAATAGATTCGTGAATAGATACTTGAATAGATTTATTAACACATTTCACTGAAAAGTATAGCGAAAATATTCAAGCTGGAGAGAAAAATGAATAGATACTAAAAAGCCGGAGCAGTCTCCCGCTCCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4621786‑4621634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccggcttTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAATGTGTTAATAAATCTATTCAAGTATCTATTCACGAATCTATTCATTAATGAGCGAGCTGACTGATCTTTTACTGCAAGGGCCG  >  NC_000913/4621662‑4621804                                                                                                                                                                                                                                                                                                          ATCAGTCAGCTCGCTCATTAATGAATAGATTCGTGAATAGATACTTGAATAGATTTATTAACACATTTCACTGAAAAGTATAGCGAAAATATTCAAGCTGGAGAGAAAAATGAATAGATACTAAAAAGCCGGAGCAGTCTCCCGCTCCG                                                                                                                                                     >  8:120676/1‑149    AGTCAGCTCGCTCATTAATGAATAGATTCGTGAATAGATACTTGAATAGATTTATTAACACATTTCACTGAAAAGTATAGCGAAAATATTCAAGCTGGAGAGAAAAATGAATAGATACTAAAAAGCCGGAGCAGTCTCCCGCTCCGGC                                                                                                                                                   <  2:164975/148‑1                                     ATAGATACTTGAATAGATTTATTAACACATTTCACTGAAAAGTATAGCGAAAATATTCAAGCTGGAGAGAAAAATGAATAGATACTAAAAAGCCGGAGCAGTCTCCCGCTCCGGCT                                                                                                                                                  >  1:89512/1‑116                                     ATAGATACTTGAATAGATTTATTAACACATTTCACTGAAAAGTATAGCGAAAATATTCAAGCTGGAGAGAAAAATGAATAGATACTAAAAAGCCGGAGCAGTCTCCCGCTCCGGCT                                                                                                                                                  <  2:89512/116‑1                                                                                                                          TAAAAAGCCGGAGCAGTCTCCCGCTCCGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAA                                                                                     <  5:87301/92‑1                                                                                                                          TAAAAAGCCGGAGCAGTCTCCCGCTCCGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAA                                                                                     >  6:87301/1‑92                                                                                                                               AGCCGGAGCAGTCTCCCGCTCCGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTC                                                                                                        >  1:54664/1‑68                                                                                                                               AGCCGGAGCAGTCTCCCGCTCCGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTC                                                                                                        <  2:54664/68‑1                                                                                                                                                 CTCCGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAATGTGTTAATAAATCTATTCAAGTATCTATTCACGAATCTATTCATTAATGAGCGAGCTGACTGATCTTTTACTGCAAGGG     <  3:36879/149‑1                                                                                                                                                 CTCCGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAATGTGT                                                                                <  5:33100/74‑1                                                                                                                                                 CTCCGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAATGTGT                                                                                >  6:33100/1‑74                                                                                                                                                    CGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAATGTGTTAATAAATCTATTCAAGTATCTATTCACGAATCTATTCATTAATGAGCGAGCTGACTGATCTTTTACTGCAAGGGCCG  >  3:96527/1‑149                                                                                                                                                    CGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAATGTGTTAATAAATCTATTCAAGTATCTATTCACGAATCTATTCAT                                        <  1:174820/111‑1                                                                                                                                                    CGGCTTTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAATGTGTTAATAAATCTATTCAAGTATCTATTCACGAATCTATTCAT                                        >  2:174820/1‑111                                                                                                                                                                                                                                                                                                          ATCAGTCAGCTCGCTCATTAATGAATAGATTCGTGAATAGATACTTGAATAGATTTATTAACACATTTCACTGAAAAGTATAGCGAAAATATTCAAGCTGGAGAGAAAAATGAATAGATACTAAAAAGCCGGAGCAGTCTCCCGCTCCGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4621786‑4621634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccggcttTTTAGTATCTATTCATTTTTCTCTCCAGCTTGAATATTTTCGCTATACTTTTCAGTGAAATGTGTTAATAAATCTATTCAAGTATCTATTCACGAATCTATTCATTAATGAGCGAGCTGACTGATCTTTTACTGCAAGGGCCG  >  NC_000913/4621662‑4621804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.