| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1220754 = | 39 (1.300) | 6 (0.210) | 6/210 | 2.4 | 14.6% | pseudogene (1154/2574 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| ? | NC_000913 | 1220775 = | 33 (1.160) | pseudogene (1175/2574 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGAAAGCTTCAGCGTGGTTGTGCCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1220782‑1220754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgaAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAAT > NC_000913/1220775‑1220854 TGAAAGCTTCAGCGTGGTTGTGCCGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTC > 3:53916/1‑93TGAAAGCTTCAGCGTGGTTGTGCCGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTC < 4:53916/93‑1 GAAAGCTTCAGCGTGGTTGTGCCGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAAT < 3:25718/108‑1 GAAAGCTTCAGCGTGGTTGTGCCGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAAT > 4:25718/1‑108 GCGTGGTTGTGCCGCTGAAGCTTTCAGAAAATACAATCTG < 1:65915/40‑1 GCGTGGTTGTGCCGCTGAAGCTTTCAGAAAATACAATCTG > 2:65915/1‑40 TGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACA > 7:81094/1‑72 TGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACA < 8:81094/72‑1 TGAAAGCTTCAGCGTGGTTGTGCCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1220782‑1220754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgaAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAAT > NC_000913/1220775‑1220854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |