| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1859579 = | 29 (0.960) | 6 (0.210) | 5/208 | 2.6 | 18.7% | coding (651/1380 nt) | ydjK | putative MFS sugar transporter, membrane protein |
| ? | NC_000913 | 1859626 = | 25 (0.890) | coding (604/1380 nt) | ydjK | putative MFS sugar transporter, membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACT > NC_000913/1859434‑1859707 | cgcgTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTcc > 6:61000/1‑149 (MQ=255) ttggcaactggtcatatccgctctgttcattgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGa > 4:110890‑M1/142‑148 (MQ=255) aGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGaatccc > 5:97267/1‑144 (MQ=255) aactggtcatatccgctctgttcattgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCt < 4:122560‑M1/5‑1 (MQ=255) aactggtcatatccgctctgttcattgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCt > 3:122560‑M1/137‑141 (MQ=255) ttgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGAATCC‑‑CCGCGCGATTCCAGCCAGCGCGGGGa > 1:123025‑M1/113‑149 (MQ=255) ttgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGAATCC‑‑CCGCGCGATTCCAGCCAGCGCGGGGa > 7:7759‑M1/113‑149 (MQ=255) aaTACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCTAGCCAGCGCgg < 5:61000/148‑1 (MQ=255) tcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTc > 2:115165‑M1/97‑138 (MQ=255) tcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTc < 1:115165‑M1/42‑1 (MQ=255) gTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTc < 4:69200/126‑1 (MQ=255) caGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGcgcg > 1:25116/1‑114 (MQ=255) caGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGcgcg < 2:25116/114‑1 (MQ=255) actggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAgc < 8:84862‑M1/53‑1 (MQ=255) actggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAgc > 7:84862‑M1/70‑122 (MQ=255) aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa > 3:137844/1‑110 (MQ=255) aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa > 3:140040/1‑110 (MQ=255) aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa < 4:137844/110‑1 (MQ=255) aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa < 4:140040/110‑1 (MQ=255) ccGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa > 2:13749/1‑100 (MQ=255) ccGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa < 1:13749/100‑1 (MQ=255) gTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGc < 2:161726/137‑1 (MQ=255) gTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGc > 1:161726/1‑137 (MQ=255) aTGACGCCTTCTTCTATCCTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCgg < 7:42096/74‑1 (MQ=255) aTGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCgg > 8:42096/1‑74 (MQ=255) aTGACGCCTTCTTCTATACTCCGCATGACCTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATaa > 7:22317/1‑115 (MQ=255) aTGACGCCTTCTTCTATACTCCGCATGACCTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATaa < 8:22317/115‑1 (MQ=255) gCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTa > 2:83272/1‑140 (MQ=255) gCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTa < 1:83272/140‑1 (MQ=255) ccTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCa > 4:40154/1‑123 (MQ=255) ccTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCa < 3:40154/123‑1 (MQ=255) cttcttCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCa < 2:55360/132‑1 (MQ=255) cttcttCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCa > 1:55360/1‑132 (MQ=255) ttctATACTCCGCATGACTTTCTTGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTa < 7:107805/97‑1 (MQ=255) ttctATACTCCGCATGACTTTCTTGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTa > 8:107805/1‑97 (MQ=255) tCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACt > 3:74288/1‑148 (MQ=255) ggCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGtt > 2:122488/1‑107 (MQ=255) ggCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGtt < 1:122488/107‑1 (MQ=255) | CGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACT > NC_000913/1859434‑1859707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |