New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1941819 =30 (1.000)8 (0.290) 8/206 1.9 23.2% coding (765/933 nt) znuA zinc ABC transporter periplasmic binding protein
?NC_000913 1941845 = 25 (0.900)coding (739/933 nt) znuA zinc ABC transporter periplasmic binding protein

GTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGC  >  NC_000913/1941681‑1941921
                                                                                                                                          |                                                                                                      
gTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCaaaaa                                                                                                 <  4:95410/146‑1 (MQ=255)
gTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCaaaaa                                                                                                 >  3:95410/1‑146 (MQ=255)
                               cTTGTTTTACCCAGTTTGATATTCGTCCCCAGTGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCa                                                                                             <  8:84400/119‑1 (MQ=255)
                                tatttcgaaaaacagtttggactgacaccgcttggtcattttaccgttaaccctgagattcaacctggcgcgcatcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTgtgt                                                                  <  1:111646‑M1/39‑1 (MQ=255)
                                tatttcgaaaaacagtttggactgacaccgcttggtcattttaccgttaaccctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTgtgt                                                                  >  2:111646‑M1/107‑145 (MQ=255)
                                      gaaaaacagtttggactgacaccgcttggtcattttaccgttaaccctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCaaaaa                                                                                                 >  7:25069‑M1/101‑108 (MQ=255)
                                      gaaaaacagtttggactgacaccgcttggtcattttaccgttaaccctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCaaaaa                                                                                                 <  8:25069‑M1/8‑1 (MQ=255)
                                                gATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCt                                              >  2:147247/1‑149 (MQ=255)
                                                 atatTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTg                                             <  1:147247/149‑1 (MQ=255)
                                                            cAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCt                                                                               <  8:14582/104‑1 (MQ=255)
                                                            cAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCt                                                                               >  7:14582/1‑104 (MQ=255)
                                                                   tCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCGCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAAtctc                           <  3:131376/149‑1 (MQ=255)
                                                                              ttaaccctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGCTTTTTGc                                                                                <  3:3991‑M1/25‑1 (MQ=255)
                                                                              ttaaccctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGCTTTTTGc                                                                                >  4:3991‑M1/61‑85 (MQ=255)
                                                                                   gAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAg                                                                                                       <  2:26513/57‑1 (MQ=255)
                                                                                   gAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAg                                                                                                       >  1:26513/1‑57 (MQ=255)
                                                                                   cctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGCttt                                                                                    <  7:85574‑M1/21‑1 (MQ=255)
                                                                                   cctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGCttt                                                                                    >  8:85574‑M1/56‑76 (MQ=255)
                                                                                        gATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCa                          <  8:38966/129‑1 (MQ=255)
                                                                                        gATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCa                          >  7:38966/1‑129 (MQ=255)
                                                                                            tCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCAt                                                       <  8:27331/96‑1 (MQ=255)
                                                                                            tCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCAt                                                       >  7:27331/1‑96 (MQ=255)
                                                                                              ccTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAACCGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGc  <  3:99192/147‑1 (MQ=255)
                                                                                              ccTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCa                                                        <  3:24061/93‑1 (MQ=255)
                                                                                              ccTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCa                                                        >  4:24061/1‑93 (MQ=255)
                                                                                              ccTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGc  >  4:99192/1‑147 (MQ=255)
                                                                                               cctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGCTTTTTGCTcaa                                                                            <  6:141143‑M1/29‑1 (MQ=255)
                                                                                               cctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGCTTTTTGCTcaa                                                                            >  5:141143‑M1/44‑72 (MQ=255)
                                                                                                tCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATg                                                      >  6:64397/1‑93 (MQ=255)
                                                                                                tCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATg                                                      <  5:64397/93‑1 (MQ=255)
                                                                                                      gACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTCGCTCAACCAACTGTGTTCTTATTTCATGTaa                                                   >  7:106219/1‑90 (MQ=255)
                                                                                                      gACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTCGCTCAACCAACTGTGTTCTTATTTCATGTaa                                                   <  8:106219/90‑1 (MQ=255)
                                                                                                           tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCa                          <  6:169518/110‑1 (MQ=255)
                                                                                                           tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCa                          >  5:169518/1‑110 (MQ=255)
                                                                                                           tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAAt          <  4:37480/126‑1 (MQ=255)
                                                                                                           tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAAt          >  3:37480/1‑126 (MQ=255)
                                                                                                           tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGAcc      >  7:50636/1‑130 (MQ=255)
                                                                                                           tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGAcc      <  8:50636/130‑1 (MQ=255)
                                                                                                                        tGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCaa    <  4:94211/119‑1 (MQ=255)
                                                                                                                        tGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCaa    >  3:94211/1‑119 (MQ=255)
                                                                                                                                          |                                                                                                      
GTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGC  >  NC_000913/1941681‑1941921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.