| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1484129 = | 31 (1.030) | 4 (0.140) | 4/204 | 2.9 | 12.6% | coding (1069/3903 nt) | hrpA | putative ATP‑dependent helicase |
| ? | NC_000913 | 1484164 = | 27 (0.980) | coding (1104/3903 nt) | hrpA | putative ATP‑dependent helicase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGATGCGCTGAACAAGCTGAACTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGT > NC_000913/1483981‑1484268 | gaaatcgtcttcggaatagagacgaatacagatcccttcggacacacgaccacagcggcctttacgctgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctg < 1:150638‑M1/1‑1 (MQ=255) aatcgtcttcggaatagagacgaatacagatcccttcggacacacgaccacagcggcctttacgctgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgctatagctgtagcggctgatacgcgctGTa < 7:23505‑M1/3‑1 (MQ=255) gtcttcggaatagagacgaatacagatcccttcggacacacgaccacagcggcctttacgctgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCg > 2:115506‑M1/143‑148 (MQ=255) gcTGAACAAGCTGAACTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCgg < 8:11085/149‑1 (MQ=255) gcTGAACAAGCTGAACTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCgg < 8:137834/149‑1 (MQ=255) aCTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAAC‑TCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTa < 4:30062/149‑1 (MQ=255) tCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATAc < 1:94367/128‑1 (MQ=255) tCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATAc > 2:94367/1‑128 (MQ=255) gctgattggcagacgcctgggaaatcggctcaatcgacaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCGGGGATTAAATACGTTATCGACCCCGGt > 1:17006‑M1/84‑116 (MQ=255) gctgattggcagacgcctgggaaatcggctcaatcgacaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCGGGGATTAAATACGTTATCGACCCCGGt < 2:17006‑M1/33‑1 (MQ=255) tgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCGGGGATTAAATACGTTATCGACCCCGGTACAgc > 1:109552‑M1/82‑119 (MQ=255) tgattggcagacgcctgggaaatcggctcaatcggcaaacgctgcactttggtgcgatagctgtagcggctgatacgcgctGTACCGGGGATTAAATACGTTATCGACCCCGGTACAgc < 2:109552‑M1/38‑1 (MQ=255) gCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCaaa < 1:141495/149‑1 (MQ=255) gCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCa > 2:141495/1‑147 (MQ=255) aaTAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAg > 2:47018/1‑142 (MQ=255) aaTAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAg < 1:47018/142‑1 (MQ=255) ggCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCg > 6:108874/1‑149 (MQ=255) ggCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa > 8:141521/1‑132 (MQ=255) ggCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa < 7:141521/132‑1 (MQ=255) ccAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGcc < 3:94411/109‑1 (MQ=255) ccAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGcc < 3:96462/109‑1 (MQ=255) ccAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGcc > 4:96462/1‑109 (MQ=255) ccAACGTCGCGGAAACGTCGCTCACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGcc > 4:94411/1‑109 (MQ=255) cAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa < 6:70113/126‑1 (MQ=255) cAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa > 5:70113/1‑126 (MQ=255) cAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAg > 8:23505/1‑149 (MQ=255) aCGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGc < 2:158469/141‑1 (MQ=255) aCGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGc > 1:158469/1‑141 (MQ=255) gTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATAGACCCCGGTACAGAGAGTATCAGCAGCTACAGCTATCGCAACAAAGTGCAGCTTTTTCCGATTGAGCCGAGTTCACAGGCGTCTGCCAATCAGCGTAAAGGcag > 4:103589/1‑147 (MQ=255) ggAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGAcc > 4:82119/1‑44 (MQ=255) ggAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGAcc < 3:82119/44‑1 (MQ=255) ggAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCtgtg > 6:137970/1‑149 (MQ=255) cGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCgt < 5:108874/149‑1 (MQ=255) gTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTg < 5:5507/98‑1 (MQ=255) gTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTg > 6:5507/1‑98 (MQ=255) tCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCgtgt < 3:103589/149‑1 (MQ=255) ccGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa < 4:101051/103‑1 (MQ=255) ccGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCa > 3:101051/1‑103 (MQ=255) | CGATGCGCTGAACAAGCTGAACTTACGCCATACCGAAATCTTGCCGCTTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGT > NC_000913/1483981‑1484268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |