New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 82399312 (0.400)6 (0.210) 6/210 2.4 33.0% coding (505/762 nt) ybhP endo/exonuclease/phosphatase family protein
?NC_000913 = 824001 13 (0.460)coding (497/762 nt) ybhP endo/exonuclease/phosphatase family protein

CGGAAACGTGCGCGCCGGGCGTCCGTGGGCGCGGGTAAAAATCTCATCCAGTCCGGCCTGCACTTTTAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCAAGCTGCGCCTGACGGTGCGCCTCACGCAGGCCCAGATGTACGCACATCACATGAATCGCTTTTCCGGTCATCGGCGGCACAATGCGGCAGTAGAGCACGCCGCGCTTTTCC  >  NC_000913/823871‑824147
                                                                                                                                  |                                                                                                                                                  
cGGAAACGTGCGCGCCGGGCGTCCGTGGGCGCGGGTAAAAATCTCATCCAGTCCGGCCTGCACTTTTAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCAtt                                                                                                                                       >  4:26525/1‑144 (MQ=255)
cGGAAACGTGCGCGCCGGGCGTCCGTGGGCGCGGGTAAAAATCTCATCCAGTCCGGCCTGCACTTTTAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCAtt                                                                                                                                       <  3:26525/144‑1 (MQ=255)
                                                          tGCACTTTTAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCAAGCTGCGCCTGACGGTGCGCCTCACGCAGGCCCAGATGTAc                                                                        >  6:103189/1‑149 (MQ=255)
                                                               ttttAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCTCCGTCCGGTAGCTCATTCAcc                                                                                                                                   <  2:175293/85‑1 (MQ=255)
                                                               ttttAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGa                                                                                                                         <  6:79407/95‑1 (MQ=255)
                                                               ttttAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGa                                                                                                                         >  5:79407/1‑95 (MQ=255)
                                                               ttttAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCAAGCTGCGCCTGACGGTGCGCCTCACGCAGGCCCAGATGAACGcaca                                                                   >  2:185704/1‑149 (MQ=255)
                                                                     cGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCAAGCTGCGCCTGACGGTGCGCCTCACGCAGGCCCAGATGTACGcacatcacat                                                             <  5:103189/149‑1 (MQ=255)
                                                                      ggATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCAAGCTGCGCCTGACGGTGCGCCTCACGCAGGCCCAGATGTACGcacatcacat                                                             >  4:152441/1‑148 (MQ=255)
                                                                               gCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCAAGCTGCGCCTGACGGTGCGCCTCACGCAGGCCCAGATGTACGCACATCACATGAATCGCttt                                                   <  1:185704/149‑1 (MQ=255)
                                                                                 tttttGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCaa                                                                                                                >  6:120449/1‑86 (MQ=255)
                                                                                                aTTGAAATCACCCGCCACCAATACCGGTTCGCCGTccggtattggtggcgggtgatttcaatgactggcggcaaaaagctaatcatccgttaaaagtgcaggccggactggatgagatttttacccgcgcccacggacgcccggcgcgc                                  <  2:79406‑M2/149‑115 (MQ=255)
                                                                                                           ccGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCAAGCTGCGCCTGACGGTGCGCCTCACGCAGGCCCAGATGTACGCACATCACATGAATCGCTTTTCCGGTCATCGGCGGCACAATGCGGCAg                       >  7:19888/1‑149 (MQ=255)
                                                                                                                accaATACCGGTTCGCCGTccggtattggtggcgggtgatttcaatgactggcggcaaaaagctaatcatccgtt                                                                                            <  2:113167‑M2/75‑57 (MQ=255)
                                                                                                                accaATACCGGTTCGCCGTccggtattggtggcgggtgatttcaatgactggcggcaaaaagctaatcatccgtt                                                                                            >  1:113167‑M2/1‑19 (MQ=255)
                                                                                                                  caATACCGGTTCGCCGTccggtattggtggcgggtgatttcaatgactggcggcaaaaagctaatcatccgttaaaagtgcaggccggactggatgagatttttacccgcgcccacggacgcccggcgcgcacgtttccggtgcaattt                <  2:28065‑M2/149‑133 (MQ=255)
                                                                                                                       ccGGTTCGCCGTccggtattggtggcgggtgatttcaatgactggcggcaaaaagctaatcatccgttaaaagtgcaggccggactggatgagatttttacccgcgcccacggacgcccggcgcgcacgtttccggtgcaatttcctc            >  1:79406‑M2/1‑12 (MQ=255)
                                                                                                                         ggTTCGCCGTccggtattggtggcgggtgatttcaatgactggcggcaaaaagctaatcatccgttaaaagtgcaggccggactggatgagatttttacccgcgcccacggacgcccggcgcgcacgtttccggtgcaatttcctctac         >  1:28065‑M2/1‑10 (MQ=255)
                                                                                                                                cGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCAAGCTGCGCCTGACGGTGCGCCTCACGCAGGCCCAGATGTACGCACATCACATGAATCGCTTTTCCGGTCATCGGCGGCACAATGCGGCAGTAGAGCACGCCGCGCTTTTcc  <  8:19888/149‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                                  
CGGAAACGTGCGCGCCGGGCGTCCGTGGGCGCGGGTAAAAATCTCATCCAGTCCGGCCTGCACTTTTAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATCGCAAGCTGCGCCTGACGGTGCGCCTCACGCAGGCCCAGATGTACGCACATCACATGAATCGCTTTTCCGGTCATCGGCGGCACAATGCGGCAGTAGAGCACGCCGCGCTTTTCC  >  NC_000913/823871‑824147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.