New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3423376 =36 (1.040)15 (0.460)
+TTGATGT
11/232 2.0 34.3% intergenic (+182/+47) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 = 4213155 25 (0.720)noncoding (116/120 nt) rrfE 5S ribosomal RNA of rrnE operon

GCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCA  >  NC_000913/3423238‑3423521
                                                                                                                                          |                                                                                                                                                 
gCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaaa                                                                                                                                          <  1:48710/148‑1 (MQ=255)
  gatctgCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCTCAACGTTCTAATCCGATCCCTGCGGATTTGTCCTACTCGGGAGATTGTTCACCGACAAACATCAGATAAAACAAAAgg                                                                                                                                       <  3:58116/144‑1 (MQ=14)
        cTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCAGACACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCAGCTCCCGTCGGATTTGTCCTACTCGGTAGAGTGATCACCGACAAACATCAGATAAAACAAAAGGcagatc                                                                                                                                 >  4:58116/1‑144 (MQ=14)
           gatttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCtt                                                                                                                              >  5:57640/1‑149 (MQ=40)
             tttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTcc                                                                                                                            >  6:100075/1‑149 (MQ=39)
                   gTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACt                                                                                                                        >  5:26938/1‑147 (MQ=38)
                    tCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGa                                                                                                                      <  1:72712/148‑1 (MQ=38)
                     gcggcagtagcgcggtggtcccacctgaccccatgccgaactcagcagtgacacgccgtagcgccgatggtagtgtggtgtctcctcatgcgagagtagggaacttccagggatcaaATAAAACCAAATGGCCAGTCTTCCGACTGAg                                                                                                                     >  4:12038‑M1/118‑148 (MQ=255)
                      tGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGcc                                                                                                                   >  1:104952/1‑149 (MQ=37)
                            tttATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGa                                                                                                                                                   >  7:154906/1‑111 (MQ=35)
                            tttATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGa                                                                                                                                                   <  8:154906/111‑1 (MQ=35)
                                ttgcgggcggCCTGCCCGGCACCCTCCGGGCCGGTGCCTCGCAAAGGTCAAATCCGGTCCCGGCGGTTTTGGCCTACTCGGGCGCCGGGTCACCGCCAAACAACACCTAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtttt                                                                                                          <  2:115188/146‑1 (MQ=11)
                                tGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtttt                                                                                                          <  5:100075/148‑1 (MQ=39)
                                tGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtttt                                                                                                          <  6:139695/148‑1 (MQ=39)
                                   cgggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt                                                                                                      <  6:26938/149‑1 (MQ=39)
                                    gggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTg                                                                                                     <  6:57640/149‑1 (MQ=39)
                                        cccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccagacatcaaATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt                                                                                                      >  5:16947‑M1/99‑144 (MQ=255)
                                        cccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccagacatcaaATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt                                                                                                      <  6:16947‑M1/46‑1 (MQ=255)
                                            tGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTgg                                                                                             >  4:50132/1‑149 (MQ=255)
                                            cctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccagacatcaaATaaaa                                                                                                                                              <  3:5689‑M1/6‑1 (MQ=255)
                                            cctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccagacatcaaATaaaa                                                                                                                                              >  4:5689‑M1/95‑100 (MQ=255)
                                             ctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctcctcatgcgagagtagagaactgccaggcatcaaATAAAACGAAAGGCCCAGTCTTCCGACTGAGCCTTTCGTTTTAtt                                                                                                       <  3:77552‑M1/45‑1 (MQ=255)
                                             ctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctcctcatgcgagagtagagaactgccaggcatcaaATAAAACGAAAGGCCCAGTCTTCCGACTGAGCCTTTCGTTTTAtt                                                                                                       >  4:77552‑M1/94‑138 (MQ=255)
                                              cccGCCACCCTCCGGGCCATTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTgg                                                                                             <  5:97866/147‑1 (MQ=255)
                                                   ccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctcctcatgcgagagtagggaactgccaggcatcaaATAAAACGAAAGGCCCAGTCTTCCGACTGa                                                                                                                      <  7:51577‑M1/30‑1 (MQ=255)
                                                   ccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctcctcatgcgagagtagggaactgccaggcatcaaATAAAACGAAAGGCCCAGTCTTCCGACTGa                                                                                                                      >  8:51577‑M1/88‑117 (MQ=255)
                                                   cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc                                                                                      >  8:145778/1‑149 (MQ=255)
                                                       cTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAg                                                                                                                     >  8:37825/1‑114 (MQ=39)
                                                       cTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAg                                                                                                                     <  7:37825/114‑1 (MQ=39)
                                                          cGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTActc                                                                                <  6:28880/148‑1 (MQ=255)
                                                           gggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACtctc                                                                              <  3:50132/149‑1 (MQ=255)
                                                            actcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccaggcatcaaATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt                                                                                                                <  1:122887‑M1/36‑1 (MQ=255)
                                                            actcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccaggcatcaaATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt                                                                                                                >  2:122887‑M1/79‑114 (MQ=255)
                                                                agaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccagacatcaaATaaaa                                                                                                                                              >  1:141166‑M1/75‑80 (MQ=255)
                                                                agaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccagacatcaaATaaaa                                                                                                                                              <  2:141166‑M1/6‑1 (MQ=255)
                                                                          aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTa                                                                                                         <  1:164445/107‑1 (MQ=255)
                                                                          aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTa                                                                                                         >  2:164445/1‑107 (MQ=255)
                                                                             gTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATgg                                                                        <  4:152114/137‑1 (MQ=255)
                                                                             gTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATgg                                                                        >  3:152114/1‑137 (MQ=255)
                                                                                        cTCCCGGCGGATTTGTCCTACTCGGGAGTGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGgc                                                 <  7:145778/149‑1 (MQ=255)
                                                                                               cggATTTGACCTACTCGGGAGAGTGTTCACCGTCTAACAACAGATTAAACAAAAGGCCGAGTCTTGCGACTGAGCCTTTTGTTTTAtt                                                                                                       <  7:132891/88‑1 (MQ=255)
                                                                                                       tCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCAc                                  <  2:104952/149‑1 (MQ=255)
                                                                                                          ccatgcgagagtagggaactgccagacatcaaATAAAACAAAAGGCCCAGTCTTcc                                                                                                                            <  2:88304‑M1/24‑1 (MQ=255)
                                                                                                          ccatgcgagagtagggaactgccagacatcaaATAAAACAAAAGGCCCAGTCTTcc                                                                                                                            >  1:88304‑M1/33‑56 (MQ=255)
                                                                                                                           aCCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATggg                                                                       <  6:157664/92‑1 (MQ=255)
                                                                                                                           aCCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATggg                                                                       >  5:157664/1‑92 (MQ=255)
                                                                                                                                    caacaGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATc                                                    >  6:152266/1‑102 (MQ=255)
                                                                                                                                    caacaGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATc                                                    <  5:152266/102‑1 (MQ=255)
                                                                                                                                       caGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTa                                                         <  5:49226/94‑1 (MQ=255)
                                                                                                                                       caGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTa                                                         >  6:49226/1‑94 (MQ=255)
                                                                                                                                       caGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTCCCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGacca  >  5:134938/1‑149 (MQ=255)
                                                                                                                                          |                                                                                                                                                 
GCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCA  >  NC_000913/3423238‑3423521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.