New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3880547	89 (1.220)	3 (0.040)	3/250	NT	3.3%	coding (675/1074 nt)	recF	gap repair protein
	?	NC_000913	= 3880561	95 (1.380)					coding (661/1074 nt)	recF	gap repair protein
Rejected: Frequency below/above cutoff threshold.

ACAGCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3880393‑3880547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctctttcCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGATACCT  <  NC_000913/3880561‑3880417                                                                                                                                                                                                                                                                                                              ACAGCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGT                                                                                                                                                          >  8:174689/1‑148  CAGCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCT                                                                                                                                                        >  8:231217/1‑149  CAGCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAACGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCT                                                                                                                                                        <  7:175498/149‑1   AGCTTAAGCTGCCCTCGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCTGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTC                                                                                                                                                       <  4:204861/149‑1   AGCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTC                                                                                                                                                       >  3:204861/1‑149    GCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGAGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCT                                                                                                                                                      >  5:4358/1‑149       TAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTC                                                                                                                                                   >  3:283573/1‑149       TAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTC                                                                                                                                                   >  3:288107/1‑149                                  CCACCGGCGCACCGGCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGA                                                                                                                         <  4:126209/148‑1                                                                     GCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATG                                                                                                                    <  7:319219/118‑1                                                                     GCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATG                                                                                                                    >  8:319219/1‑118                                                                                                                                                    TCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGCAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGg       <  6:221338/148‑2                                                                                                                                                     CTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGAT      <  5:123561/148‑1                                                                                                                                                          TCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGATACCT  <  2:83331/147‑1                                                                                                                                                           CCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTT                                                                                              >  6:326225/1‑54                                                                                                                                                                                                                                                                                                              ACAGCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3880393‑3880547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctctttcCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATTCGCGCCGACGGTGCGCCGGTGGAAGATACCT  <  NC_000913/3880561‑3880417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.