New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3853937 =158 (2.160)3 (0.040) 3/260 NT 2.1% coding (16/1185 nt) emrD multidrug efflux system protein
?NC_000913 3853960 = 132 (1.850)coding (39/1185 nt) emrD multidrug efflux system protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 149 total aligned reads displayed.

TTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTACGGTGTCTCACAGCTGT  >  NC_000913/3853812‑3854105
                                                                                                                                                    |                                                                                                                                                 
 tCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTgg                                                                                                                                                  >  8:190422/1‑149 (MQ=255)
  agcagataagcgcccattacgctctgcaccgccccttcacggacgttgagatcgcgcgccatatcggcaatagctggaatataaatggtttgcgccatctgaccgacggccacgagtaataccAACATCAATTTGTTATTGATGTTgg                                                                                                                                                  >  7:165604‑M1/124‑148 (MQ=255)
    cagataagcgcccattacgctctgcaccgccccttcacggacggtgagatcgcgcgccatatcggcaatagctggaatataaatggtttgcgccatctgcccgacggccacgagtaatacccacatcaagaacaaattgccgttgcttt                                                                                                                                               >  4:46703‑M2/145‑145 (MQ=255)
      gCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTAtt                                                                                                                                              <  8:44721/148‑1 (MQ=255)
      gCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTAt                                                                                                                                               <  7:175316/147‑1 (MQ=255)
       cGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACTTCAATTTGATATTGATGTTGGTATTa                                                                                                                                             >  8:165815/1‑148 (MQ=255)
         tataTCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTc                                                                                                                                          >  6:90833/1‑149 (MQ=255)
         tataTCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGGGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTc                                                                                                                                          >  2:305671/1‑149 (MQ=255)
           tatCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGt                                                                                                                                        <  7:203062/149‑1 (MQ=255)
           tatCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGt                                                                                                                                        <  7:252684/149‑1 (MQ=255)
            atCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTg                                                                                                                                       >  6:95872/1‑149 (MQ=255)
            atCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAAGGAAAAGGCAAAGAAACGTCAATTTGTTAGTGATGTTGGTATTACTCGTg                                                                                                                                       >  8:277593/1‑149 (MQ=255)
             tCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTg                                                                                                                                       <  6:74759/148‑1 (MQ=255)
             tCTGGCTAACATTCATCAATGTGATAGATTACTCTCCAGCATTTATGGTAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTg                                                                                                                                       <  1:115504/148‑1 (MQ=255)
                 gCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTgg                                                                                                                                      <  4:45280/145‑1 (MQ=255)
                     aCATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCg                                                                                                                                <  5:231311/147‑1 (MQ=255)
                      cATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTc                                                                                                                             <  6:317860/149‑1 (MQ=255)
                      cATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTc                                                                                                                             <  1:135249/149‑1 (MQ=255)
                       aTTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTTATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCa                                                                                                                            <  1:85219/149‑1 (MQ=255)
                       aTTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCa                                                                                                                            <  3:16696/149‑1 (MQ=255)
                        ttCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTGGGt                                                                                                                              >  2:193569/1‑146 (MQ=255)
                          catcaATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGa                                                                                                                          <  4:268227/148‑1 (MQ=255)
                          catcaATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGa                                                                                                                          <  7:255485/148‑1 (MQ=255)
                          catcaATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGAt                                                                                                                         >  3:49433/1‑149 (MQ=255)
                          catcaAAGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGa                                                                                                                          <  6:282644/148‑1 (MQ=255)
                           atcaATTTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATg                                                                                                                        <  5:163231/149‑1 (MQ=255)
                           atcaATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACACGTGGCCGTCGGTCAGATg                                                                                                                        >  1:34474/1‑149 (MQ=255)
                           atcaATGTGATAGATTCCTCTACCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGAt                                                                                                                         <  8:293165/148‑1 (MQ=255)
                             caATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGgc                                                                                                                      >  7:288376/1‑149 (MQ=255)
                              aaTGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGgcg                                                                                                                     >  7:281144/1‑149 (MQ=255)
                              aaTGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGgcg                                                                                                                     <  5:23415/149‑1 (MQ=255)
                               aTGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATgg                                                                                                                       <  2:327468/146‑1 (MQ=255)
                                     tAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCa                                                                                                              <  8:232433/149‑1 (MQ=255)
                                       gATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCAtt                                                                                                            <  1:165580/149‑1 (MQ=255)
                                       gATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCAt                                                                                                             <  3:81545/148‑1 (MQ=255)
                                        aTTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCAttt                                                                                                           <  1:71662/149‑1 (MQ=255)
                                            ctctCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTTGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTtata                                                                                                        <  5:292941/148‑1 (MQ=255)
                                            ctctCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTtata                                                                                                        <  7:190422/148‑1 (MQ=255)
                                             tctcCCGCATTTATGGGAATGCGTAGTGTCTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCAGTCGGTCAGATGGCGCAAACCATTTATAtt                                                                                                      >  1:279901/1‑149 (MQ=255)
                                             tctcCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATAtt                                                                                                      >  7:68728/1‑149 (MQ=255)
                                             tctcCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATAtt                                                                                                      >  3:20226/1‑149 (MQ=255)
                                               tcCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTc                                                                                                     >  5:112632/1‑148 (MQ=255)
                                               tcCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTc                                                                                                     >  2:149739/1‑148 (MQ=255)
                                                  cGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCg                                                                                                                                <  7:293684/118‑1 (MQ=255)
                                                      tttATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTAtt                                                                                             >  6:228861/1‑149 (MQ=255)
                                                        tATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTg                                                                                            <  1:193569/148‑1 (MQ=255)
                                                          tGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGcc                                                                                          <  6:112632/148‑1 (MQ=255)
                                                            ggAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAACGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGGCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGa                                                                                        <  3:212400/148‑1 (MQ=255)
                                                            ggAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAAACATTTATATTCCAGCTATTGCCGa                                                                                        <  4:264309/148‑1 (MQ=255)
                                                               aTGCGTAGTGACTTAGTCTAATTATTTTTATAAAAGCATCCGTGATAATGCAAAGGCAAAGAAACGTCAATTTGTGATTGATGTGGGTATTACTCGTGGCCGTCGGTCAGCTGGCGCAACCCATTGATATTCCCGCTAGTGCCGagagg                                                                                    >  8:227191/1‑145 (MQ=255)
                                                                   gTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGgcgc                                                                                >  3:246788/1‑149 (MQ=255)
                                                                    tAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGgcgcg                                                                               >  1:131193/1‑149 (MQ=255)
                                                                     aGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGgcgcgc                                                                              >  2:298091/1‑149 (MQ=255)
                                                                         aCTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGAtc                                                                          <  2:221344/149‑1 (MQ=255)
                                                                         aCTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGAt                                                                           <  1:149739/148‑1 (MQ=255)
                                                                              ttCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAATGCAAAGAAACGTAAATTTGTTATTGATGTTGGTATTACTCTTGGCCGTCGGTCAGATGGCTCAATCAATTTTTATTCCAGGTATTGCCGATATGGCGCGCGATCTAAAc                                                                     >  5:154801/1‑149 (MQ=255)
                                                                              ttCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGTCAAAGAAACGTAAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTAAAc                                                                     >  8:10100/1‑149 (MQ=255)
                                                                              ttCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCaa                                                                      <  5:90833/148‑1 (MQ=255)
                                                                                 tAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGTCGATATGGCGCGCGATCTCAACGTc                                                                  >  2:163593/1‑149 (MQ=255)
                                                                                  aaTTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGAtct                                                                         >  1:186693/1‑141 (MQ=255)
                                                                                   attattTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTTTTATTGATGTTGGTATTACTCGTGGCCGTATGTCAGATGGCGCAAACCATTTATATTCCAGATATTGACGATATGGCTATCGATCTCAACATCCg                                                                >  4:73598/1‑149 (MQ=255)
                                                                                   attattTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGAt                                                                           >  3:71068/1‑138 (MQ=255)
                                                                                   attattTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGAt                                                                           <  4:71068/138‑1 (MQ=255)
                                                                                   attattTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGt                                                                   <  5:330389/146‑1 (MQ=255)
                                                                                   attattTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACCTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTc                                                                  <  3:228854/147‑1 (MQ=255)
                                                                                    ttattTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGt                                                               >  5:246750/1‑149 (MQ=255)
                                                                                    ttattTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGt                                                               <  6:68217/149‑1 (MQ=255)
                                                                                    aaatggtttgcgccatctgaccgacggccacgagtaataccAACGTCAATTTGTTATTGATGTTGGTa                                                                                                                                                >  1:131790‑M1/42‑68 (MQ=255)
                                                                                       tttttATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGaa                                                            <  3:166089/149‑1 (MQ=255)
                                                                                       tttttATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGaa                                                            <  8:216690/149‑1 (MQ=255)
                                                                                         tttATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAg                                                           <  4:49433/148‑1 (MQ=255)
                                                                                          ttATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAggg                                                         >  1:338830/1‑149 (MQ=255)
                                                                                               aaaGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCa                                                                                                   >  8:140094/1‑102 (MQ=255)
                                                                                               aaaGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCa                                                                                                   <  7:140094/102‑1 (MQ=255)
                                                                                               aaaGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAAc                                                                     >  2:295933/1‑132 (MQ=255)
                                                                                                aaGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTg                                                   <  2:131193/149‑1 (MQ=255)
                                                                                                     tCCGTGATAATGAAAAGGCAAAGAACCGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCagcg                                              >  5:330537/1‑147 (MQ=255)
                                                                                                     tCCGTGATAATCAAAAGGCAAAGAAACGTCAAATTGTTAATGATGTTGTTAAAACTCGTGGCCGTCGGTCAGATGGCGCAAACAATTTATATTCCAGCTATTGCCGATATCTCTCGCGATCTCAACGTCCGTGAAGGGGAGGTGCaga                                               >  5:136012/1‑148 (MQ=255)
                                                                                                       cGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGa                                                             >  4:98130/1‑132 (MQ=255)
                                                                                                        gTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCg                                            >  8:291453/1‑148 (MQ=255)
                                                                                                         tGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGAt                                                                           >  8:326309/1‑116 (MQ=255)
                                                                                                            tAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATg                                       >  8:30195/1‑149 (MQ=255)
                                                                                                             aaTGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATgg                                      >  7:293403/1‑149 (MQ=255)
                                                                                                              aTGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCgg                                                     >  3:297883/1‑133 (MQ=255)
                                                                                                                    aGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTa                               <  4:200663/149‑1 (MQ=255)
                                                                                                                     ggCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTAt                              <  1:305671/149‑1 (MQ=255)
                                                                                                                      gCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATc                             >  4:38429/1‑149 (MQ=255)
                                                                                                                        aaaGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGTCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATctg                           <  1:163593/149‑1 (MQ=255)
                                                                                                                         taccaacatcaataacaaattgacgttGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCAttt                                                                                                           <  2:131790‑M2/41‑1 (MQ=255)
                                                                                                                                gTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTa                   >  4:134008/1‑149 (MQ=255)
                                                                                                                                gTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTa                   <  8:281144/149‑1 (MQ=255)
                                                                                                                                 tCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTAc                  >  2:155310/1‑149 (MQ=255)
                                                                                                                                  cAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTACg                 >  6:319361/1‑149 (MQ=255)
                                                                                                                                     tttGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTACGgtg              >  1:76314/1‑149 (MQ=255)
                                                                                                                                     tttGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATAAGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTACGgtg              >  3:144732/1‑149 (MQ=255)
                                                                                                                                         ttATTGATGTTGGTATTAGTCGTGGCCGTCGGTCAGATGGCGCATACCATTTATATTGCAGCTATTGCCGTTATGGCGAGCGATCTCATCGTCCGTGAAGGGGCGGTGCAGAGCGTATTGGGGGGTTATCTGCTGACTTACGGTGtct           <  6:136012/148‑1 (MQ=255)
                                                                                                                                          tATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGAGATCTCAACGTCCGTGAAGGGGCGGTTCAGAGCGTAATGGGCGCTTATCTGCTGACTTACGGTGTCTca         >  3:143031/1‑149 (MQ=255)
                                                                                                                                           aTTGATGTTGGTATTACTCTTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATGTCTACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTACGGTGTCTca         <  7:165815/148‑1 (MQ=255)
                                                                                                                                           aTTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGGGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTACGGTGTCTca         <  5:95872/148‑1 (MQ=255)
                                                                                                                                                 gttGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTACGGTGTCTCACAGCTGt  >  8:54710‑M2/4‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
TTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTTATTGATGTTGGTATTACTCGTGGCCGTCGGTCAGATGGCGCAAACCATTTATATTCCAGCTATTGCCGATATGGCGCGCGATCTCAACGTCCGTGAAGGGGCGGTGCAGAGCGTAATGGGCGCTTATCTGCTGACTTACGGTGTCTCACAGCTGT  >  NC_000913/3853812‑3854105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.