Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)93 (0.890) 74/278 0.4 98.9% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 1 (0.010)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =1 (0.010)90 (0.860) 75/278 0.3 98.8% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 180 total aligned reads displayed.

TACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACC  >  NC_000913/1292886‑1293180
                                                                                                                                                  |                                                                                                                                                    
gatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctt                                                                                                                                                     >  4:135409‑M1/147‑148 (MQ=255)
 atagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTtgt                                                                                                                                                   >  1:199771‑M1/146‑149 (MQ=255)
   ggATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGAAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgc                                                                                                                                                 >  2:409104/1‑149 (MQ=255)
    gcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgc                                                                                                                                                 >  2:108177‑M1/143‑148 (MQ=255)
     cgctgatgtccggcggtgcttttgccgttacgcacccccccgtcagtagctgaacaggagggacagctgatagaaacagaagcccctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccg                                                                                                                                               <  3:255781‑M1/8‑1 (MQ=255)
      tgttgtTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                              >  1:291781‑M2/1‑148 (MQ=255)
       gttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                             <  2:334672‑M2/149‑3 (MQ=255)
          gttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggta                                                                                                                                           >  1:252004‑M2/1‑144 (MQ=255)
          atgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaa                                                                                                                                           >  4:204312‑M1/137‑148 (MQ=255)
          atgtccggcggtgattttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatataaacagacgccactgtagcccctcaaaaacaccataatacactaaatcagtaagttggcagaatccccTTGTGCCGGCaa                                                                                                                                           <  2:235381‑M1/12‑1 (MQ=255)
            gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaata                                                                                                                                         <  1:184744‑M1/14‑1 (MQ=255)
              aGAATTTTAAGTGCTTCTCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGATCCTTAATTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAATTTGTTCTTTATTTTGTGACGggtaatgac                                                                                                                                      <  5:162922‑M2/149‑10 (MQ=255)
              aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgac                                                                                                                                      >  6:193430‑M2/1‑140 (MQ=255)
              aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                         >  2:70532‑M2/1‑140 (MQ=255)
                  cggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCt                                                                                                                                  <  4:196951‑M1/21‑1 (MQ=255)
                      aaGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaact                                                                                                                               <  7:427898‑M2/148‑17 (MQ=255)
                         tttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCAt                                                                                                                            <  5:20185‑M1/27‑1 (MQ=255)
                          gCTTCGCTCATTGTAGTAATCTTAAACTTATATTGGGGTGGTTTGTTGAGGTACTAATAGAGCCTTAAATTGAGTTGTGCAATAGCCAGGATTGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttatt                                                                                                                           >  5:241654‑M2/1‑128 (MQ=255)
                             ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaaa                                                                                                                        >  7:209172‑M1/118‑148 (MQ=255)
                               gttacgcaccaccccgtcagtagctgaacaggagttacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagtttgcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                                     >  1:235381‑M1/116‑149 (MQ=255)
                               gttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                                     >  3:89924‑M1/116‑149 (MQ=255)
                                ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAg                                                                                                                    >  7:57097‑M1/115‑149 (MQ=255)
                                  acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                                   >  7:305147‑M1/113‑148 (MQ=255)
                                       tagtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttat                                                                                                              >  6:133886‑M2/1‑115 (MQ=255)
                                          taATCTCAAACTTATATTTGTGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                           >  1:268455‑M2/1‑112 (MQ=255)
                                           cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAc                                                                                                         <  8:152373‑M1/46‑1 (MQ=255)
                                           aaTCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                           <  6:377716‑M2/147‑37 (MQ=255)
                                             tctcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTTTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                           <  6:174695‑M2/145‑37 (MQ=255)
                                             cgtcagtagctgaacaggagggacagctgatagaaacagaagcaactggagcacctcaaaaacacaatcatacactaaatcagtaagttggcagcatcacaTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgc                                                                                                       <  6:126909‑M1/48‑1 (MQ=255)
                                               tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTATTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagat                                                                                                      <  7:190222‑M2/148‑42 (MQ=255)
                                                  gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcggcatcaccTTGTGCCGCCAATAAATATCttt                                                                                                                                >  2:404500‑M1/97‑119 (MQ=255)
                                                  aaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatg                                                                                                  <  4:253577‑M2/149‑46 (MQ=255)
                                                  aaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatg                                                                                                  >  8:427898‑M2/1‑104 (MQ=255)
                                                    cTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                                >  4:68444‑M2/1‑102 (MQ=255)
                                                      ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg                                                                                              >  4:255781‑M1/93‑149 (MQ=255)
                                                        tatTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                                                                            >  2:206241‑M2/1‑98 (MQ=255)
                                                           caggagggaaagctgatagaaacacaagcccacggagcacctacaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTa                                                                                         >  3:351003‑M1/88‑149 (MQ=255)
                                                            ggggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact                                                                                        <  4:126950‑M2/149‑56 (MQ=255)
                                                              ggtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                      >  3:48119‑M2/1‑92 (MQ=255)
                                                              ggtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                      >  1:334672‑M2/1‑92 (MQ=255)
                                                              gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgc                                                                                                                                              >  6:339034‑M1/85‑93 (MQ=255)
                                                                  gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca                                                                                  >  3:253577‑M2/1‑88 (MQ=255)
                                                                  gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCAATGAATGTAAGGAATTCAAAATTGTTCTTTTTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc                                                                                   >  1:409104‑M2/1‑88 (MQ=255)
                                                                  gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                                   <  1:122091‑M1/36‑1 (MQ=255)
                                                                    cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgc                                                                                                       >  7:451983‑M1/79‑126 (MQ=255)
                                                                    cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgc                                                                                                       <  8:451983‑M1/48‑1 (MQ=255)
                                                                       ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAt                                                                                        >  6:65728‑M1/76‑138 (MQ=255)
                                                                       ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAt                                                                                        <  5:65728‑M1/63‑1 (MQ=255)
                                                                               ataataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctc                                                                          <  6:236857‑M2/144‑70 (MQ=255)
                                                                                acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcag                                                                    <  4:55658‑M1/83‑1 (MQ=255)
                                                                                    agagCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                                <  3:129321‑M2/149‑80 (MQ=255)
                                                                                    agagCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc                                                                            >  1:387952‑M2/1‑70 (MQ=255)
                                                                                      agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                                <  3:273001‑M2/147‑80 (MQ=255)
                                                                                      agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                                <  1:365333‑M2/147‑80 (MQ=255)
                                                                                        ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgag                                                             <  2:143464‑M2/148‑83 (MQ=255)
                                                                                         actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAgg                                                           >  4:48993‑M1/58‑149 (MQ=255)
                                                                                           tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCa                                                                                                   >  4:376052‑M1/56‑107 (MQ=255)
                                                                                             gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcataaccTAGTCCCGCCAATAAATATATTTACATAAAATTAGCCAGAAAAGACGCGCCATATAGCCCTATTTACACCGATGATTTCCCAGCACGTGAGGTTa                                                        <  5:92290‑M1/95‑1 (MQ=255)
                                                                                              aTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                                      >  4:245046‑M2/1‑60 (MQ=255)
                                                                                               gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaaa                                                     <  5:126419‑M1/98‑1 (MQ=255)
                                                                                               gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaaa                                                     >  3:200799‑M1/52‑149 (MQ=255)
                                                                                                 cAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc                                                    <  1:49040‑M2/148‑92 (MQ=255)
                                                                                                  aGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                                  <  7:13296‑M2/149‑94 (MQ=255)
                                                                                                   ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                 <  5:149318‑M1/102‑1 (MQ=255)
                                                                                                   ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                 <  8:37485‑M1/102‑1 (MQ=255)
                                                                                                      aaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCt                                               <  1:168063‑M1/104‑1 (MQ=255)
                                                                                                       aaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGa                                             <  5:448672‑M1/106‑1 (MQ=255)
                                                                                                       aaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGa                                             >  3:196951‑M1/44‑149 (MQ=255)
                                                                                                         aacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaaaa                                                                                                            >  7:337234‑M1/42‑84 (MQ=255)
                                                                                                         aacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaaaa                                                                                                            <  8:337234‑M1/43‑1 (MQ=255)
                                                                                                          aaTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc                                          <  5:9778‑M2/149‑102 (MQ=255)
                                                                                                             ccatcatacactaactcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGCCGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATg                                       >  8:204154‑M1/38‑149 (MQ=255)
                                                                                                             ccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAAATAGCCAGAAAAGACGCGGCAAATACCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATg                                       >  1:70445‑M1/38‑149 (MQ=255)
                                                                                                              catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                                      >  7:37485‑M1/37‑149 (MQ=255)
                                                                                                               ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc                                     <  1:124665‑M2/149‑107 (MQ=255)
                                                                                                                cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacg                                                         >  6:22756‑M2/1‑42 (MQ=255)
                                                                                                                cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacg                                                         <  5:22756‑M2/128‑87 (MQ=255)
                                                                                                                  atacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTcac                                   >  5:264673‑M1/33‑148 (MQ=255)
                                                                                                                     cactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAttt                               >  2:377357‑M1/30‑149 (MQ=255)
                                                                                                                      actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAttt                               <  5:342588‑M1/120‑1 (MQ=255)
                                                                                                                       gTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                             <  1:292737‑M2/149‑115 (MQ=255)
                                                                                                                        taaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAt                            <  8:159870‑M1/123‑1 (MQ=255)
                                                                                                                        tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                             >  6:9778‑M2/1‑34 (MQ=255)
                                                                                                                          aatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAtgc                          >  3:55658‑M1/25‑148 (MQ=255)
                                                                                                                          aatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATg                           >  1:214945‑M1/25‑148 (MQ=255)
                                                                                                                          aatcagaatgttggcatcatcaccGTGTGCCGCCAATAAATATCTTTTCATAATAATAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAATCTTCCTGATTCATGTCACATTTTATg                           >  3:239251‑M1/25‑148 (MQ=255)
                                                                                                                           ggAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgc                         >  1:143464‑M2/1‑31 (MQ=255)
                                                                                                                            tcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                         <  8:265481‑M1/126‑1 (MQ=255)
                                                                                                                              agtaagttggcagcatcaccTTGTGGCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGTCATATAGCCCTATTTACACCGATTATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgag                      >  6:87258‑M1/21‑149 (MQ=255)
                                                                                                                              aTTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                      >  6:95531‑M2/1‑28 (MQ=255)
                                                                                                                               ttCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                             <  2:193012‑M2/141‑115 (MQ=255)
                                                                                                                                taagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCTTGTCACATTTTATGGGGAGAt                    <  3:28614‑M1/131‑1 (MQ=255)
                                                                                                                                 cAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct                    >  2:49040‑M2/1‑25 (MQ=255)
                                                                                                                                    aaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgc                         <  7:155284‑M2/140‑119 (MQ=255)
                                                                                                                                           cTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg          >  7:287459‑M2/1‑15 (MQ=255)
                                                                                                                                             tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGTTga       <  8:298228‑M1/144‑1 (MQ=255)
                                                                                                                                               aTTTTGTGCCGggtaatgactccaaattattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttat      >  8:190222‑M2/1‑11 (MQ=255)
                                                                                                                                                ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgc    <  8:53531‑M2/149‑140 (MQ=255)
                                                                                                                                                 cTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCGCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgacgac   <  6:117197‑M1/148‑1 (MQ=255)
                                                                                                                                                  ttGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGAcc  >  8:125906/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
TACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACC  >  NC_000913/1292886‑1293180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.