| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3239599 = | 44 (1.180) | 6 (0.230) +TCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCT |
6/176 | 2.8 | 18.0% | intergenic (+54/‑345) | alx/sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| ? | NC_000913 | 3504854 = | 34 (0.910) | intergenic (+71/+81) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTG > NC_000913/3504726‑3504989 | cGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAAcc < 5:167355/146‑1 (MQ=255)cGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAAcc > 6:167355/1‑146 (MQ=255) aaCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCtctc > 6:57846/1‑149 (MQ=255) ccGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCGcccctttggg < 5:149134/148‑7 (MQ=255) cgcgCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTcccc > 4:39551/1‑141 (MQ=255) cgcgCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTcccc < 3:39551/141‑1 (MQ=255) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCGCCCCTTT‑GGGGAGAggg < 6:124659/149‑1 (MQ=39) gCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCg > 1:61913/1‑149 (MQ=255) cTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCGCCCCTTT‑GGGGAGAgggttagg > 8:92146/1‑137 (MQ=38) cTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCGCCCCTTT‑GGGGAGAgggttagg < 7:92146/142‑6 (MQ=38) gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAc > 4:79819/1‑99 (MQ=255) gATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAc < 3:79819/99‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAAc < 1:176095/101‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAAc > 2:176095/1‑101 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCtt > 8:88447/1‑148 (MQ=255) aaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACgg < 7:88447/149‑1 (MQ=255) aaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACgg > 5:177423/1‑149 (MQ=255) gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑ggg > 4:21398/1‑110 (MQ=255) gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑ggg < 3:21398/110‑1 (MQ=255) gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTg < 5:57846/149‑1 (MQ=255) aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCa < 1:5928/123‑1 (MQ=255) aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCa > 2:5928/1‑123 (MQ=255) cctcaccccgaccctctccctggaagggagagggtcggggtgagggtaatttttcgcaccgatgctggcctGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGGa > 2:66503‑M2/72‑113 (MQ=255) cctcaccccgaccctctccctggaagggagagggtcggggtgagggtaatttttcgcaccgatgctggcctGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGGa < 1:66503‑M2/42‑1 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCa < 6:177423/149‑1 (MQ=255) cccgaccctctccctggaagggagagggtcggggtgagggtaatttttcgcaccgatgctggcctGTTCCCCTCACCCTAACCCTCTcc < 7:26976‑M2/24‑1 (MQ=255) cccgaccctctccctggaagggagagggtcggggtgagggtaatttttcgcaccgatgctggcctGTTCCCCTCACCCTAACCCTCTcc > 8:26976‑M2/66‑89 (MQ=255) accctctccctggaagggagagggtcggggtgagggtaatttttcgcaccgatgctggcctGTTccc > 5:134665‑M2/62‑67 (MQ=255) accctctccctggaagggagagggtcggggtgagggtaatttttcgcaccgatgctggcctGTTccc < 6:134665‑M2/6‑1 (MQ=255) aTAAGATGCGCCAGCATCGCATCCGGCGATTATGGAGAGTTGAATTTTACATAACGTACTTTCAACTCACACTAACCATCGAACCAAA‑TGGGCAAGGGGACCGTTAAGTACGTAATTTAGATTTCAGGTGATATAAAGCATTAAATaat > 8:120230/1‑147 (MQ=255) ggCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCtt < 4:360/99‑1 (MQ=255) ggCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCtt > 3:360/1‑99 (MQ=255) gCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTc > 5:71537/1‑81 (MQ=255) gCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTc < 6:71537/81‑1 (MQ=255) gcgcGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtc > 8:11768/1‑149 (MQ=255) gcgTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtctc < 7:11768/149‑1 (MQ=255) gAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCAc > 5:99658/1‑149 (MQ=255) ttACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTg > 2:163981/1‑149 (MQ=255) ccGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTc > 7:99686/1‑135 (MQ=255) ccGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTc < 8:99686/135‑1 (MQ=255) | CGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAA‑GGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTG > NC_000913/3504726‑3504989 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |