New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4411257 =99 (1.120)3 (0.040) 3/246 NT 3.3% intergenic (+6/‑45) yjfJ/yjfK PspA/IM30 family protein/DUF2491 family protein
?NC_000913 4411284 = 84 (1.030)intergenic (+33/‑18) yjfJ/yjfK PspA/IM30 family protein/DUF2491 family protein
Rejected: Frequency below/above cutoff threshold.

CGAAACGCTAACGTGTCGAGCGTAAAGCCACTATTGAGATGAAGTCCCAGCGGACCACGAGCGATAGCTGGCTTATTATCCTTGCCAAACAGACGCTGGAAAAAACCAGACATATTTTATCCTTAAAATAGTTGCCAGCCTTTTAGCGAGGCTGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4411414‑4411257
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggctggcaaCTATTTTAAGGATAAAATATGTCTGGTTTTTTCCAGCGTCTGTTTGGCAAGGATAATAAGCCAGCTATCGCTCGTGGTCCGCTGGGACTTCATCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAA  >  NC_000913/4411284‑4411430
                                                                                                                                                                                                                                                                                                                 
CGAAACGCTAACGTGTCGAGCGTAAAGCCACTATTGAGATGAAGTCCCAGCGGACCACGAGCGATAGCTGGCTTATTATCCTTGCCAAACAGACGCTGGAAAAAACCAGACATATTTTATCCTTAAAATAGTTGCCAGCCTTTTAGCGA                                                                                                                                                              <  7:281242/149‑1
  AAACGCTAACGTGTCTAGCGTAAAGCAACTATTGAGATGAAGTCCCAGCGGACCACGAGCGATAGCTGGCTTATTGTCCTTGCCAAACAGACGCTGGAAAAAACCAGACATATTTTATCCTTAAAATAGTTGCCAGCCTTTTAGCGAGG                                                                                                                                                            <  3:147627/149‑1
              GTCGAGCGTAAAGCCACTATTGAGATGAAGTCCCAGCGGACCACGAGCGATAGCTGGCTTATTATCCTTGCCAAACAGACGCTGGAAAAAACCAGACATATTTTATCCTTAAAATAGTTGCCAGCCTTTTAGCGAGGCTGGCA                                                                                                                                                      >  7:207283/1‑143
              GTCGAGCGTAAAGCCACTATTGAGATGAAGTCCCAGCGGACCACGAGCGATAGCTGGCTTATTATCCTTGCCAAACAGACGCTGGAAAAAACCAGACATATTTTATCCTTAAAATAGTTGCCAGCCTTTTAGCGAGGCTGGCA                                                                                                                                                      <  8:207283/143‑1
                                                                       CTTATTATCCTTGCCAAACAGACGCTGGAAAAAACCAGACATATTTTATCCTTAAAATAGTTGCCAGCCTTTTAGCGAGGCTGGCAACTATTTTAAGGATAAAATATGTCTGGTTTTTTCCAGCGTCTGTTTGGCAAGGATAATAAGCC                                                                                       <  2:292036/149‑1
                                                                                                                         CTTAAAATAGTTGCCAGCCTTTTAGCGAGGCTGGCAACTATTTTAAGGATAAAATATGTCTGGTTTTTTCCAGCGTCTGTTTGGCAAGGATAATAAGCCAGCTATCGCTCGTGGTCCGCTGG                                                                <  5:299998/122‑1
                                                                                                                         CTTAAAATAGTTGCCAGCCTTTTAGCGAGGCTGGCAACTATTTTAAGGATAAAATATGTCTGGTTTTTTCCAGCGTCTGTTTGGCAAGGATAATAAGCCAGCTATCGCTCGTGGTCCGCTGG                                                                >  6:299998/1‑122
                                                                                                                                                          GCAACTATTTTAAGGATAAAATATGTCTGGTTTTTTCCAGCGTCTGTTTGGCAAGGATAATAAGCCAGCTATCGCTCGTGGTCCGCTGGGACTTCATCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATG    <  6:27579/149‑1
                                                                                                                                                            AACTATTTTAAGGATAAAATATGTCTGGTTTTTTCCAGCGTCTGTTTGGCAAGGATAATAAGCCAGCTATCGCTCGTGGTCCGCTGGGACTTCATCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAA  <  4:272629/149‑1
                                                                                                                                                                                                                                                                                                                 
CGAAACGCTAACGTGTCGAGCGTAAAGCCACTATTGAGATGAAGTCCCAGCGGACCACGAGCGATAGCTGGCTTATTATCCTTGCCAAACAGACGCTGGAAAAAACCAGACATATTTTATCCTTAAAATAGTTGCCAGCCTTTTAGCGAGGCTGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4411414‑4411257
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggctggcaaCTATTTTAAGGATAAAATATGTCTGGTTTTTTCCAGCGTCTGTTTGGCAAGGATAATAAGCCAGCTATCGCTCGTGGTCCGCTGGGACTTCATCTCAATAGTGGCTTTACGCTCGACACGTTAGCGTTTCGTTTGCTGGAAGATGAA  >  NC_000913/4411284‑4411430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.