Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	97 [0]	[0] 96	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	86 (0.920)	70/260	0.3	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGC  >  NC_000913/3815710‑3816006                                                                                                                                                      |                                                                                                                                                     aaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGC                                                                                                                                                      >  7:226929‑M1/1‑149 (MQ=255)  aCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCc                                                                                                                                                     <  6:143320‑M1/149‑2 (MQ=255)  aCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCc                                                                                                                                                     <  1:88329‑M1/149‑2 (MQ=255)       accacctGCTTGCTAATCGCAAATTCAATAAACGGGCGCGGATATGGTTGCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCGTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcc                                                                                                                                                 <  4:71756‑M1/146‑6 (MQ=255)        acacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                                <  7:97868‑M1/148‑7 (MQ=255)         cacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccct                                                                                                                                              <  8:277715‑M1/149‑9 (MQ=255)          acCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctg                                                                                                                                             >  7:388962‑M1/1‑140 (MQ=255)            cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                           >  3:288907‑M1/1‑138 (MQ=255)            cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                           >  3:194302‑M1/1‑138 (MQ=255)            cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                           >  1:401863‑M1/1‑138 (MQ=255)             tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTATTCTACAGACAAAAAAAAGCCGACTCAACAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccagtccac                                                                                                                                          >  8:107363‑M1/1‑137 (MQ=255)                  gctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                                     >  6:111812‑M1/1‑132 (MQ=255)                   ctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                                    <  3:75069‑M1/149‑19 (MQ=255)                    tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                                    >  7:47797‑M1/1‑130 (MQ=255)                      aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                                 <  7:42611‑M1/149‑22 (MQ=255)                       gcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                                >  2:324384‑M1/1‑127 (MQ=255)                         tcaAATTCAATAAACTGGCGCTGATTTGGTTTCATGCCTTCGATCCTCATCTTACTTTTCTACAGTCATAAAAAACGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgctcttcaatg                                                                                                                                   <  2:353956‑M1/143‑20 (MQ=255)                         gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTACTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcacctgaccttcaatgaaga                                                                                                                               >  1:353956‑M1/1‑125 (MQ=255)                          cAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                             >  4:259425‑M1/1‑124 (MQ=255)                            aaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc                                                                                                                           <  2:188716‑M1/149‑28 (MQ=255)                              ttCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgt                                                                                                                         <  7:88525‑M1/149‑30 (MQ=255)                                  aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttc                                                                                                                     <  5:111812‑M1/149‑34 (MQ=255)                                  aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttc                                                                                                                     <  8:341175‑M1/149‑34 (MQ=255)                                   tAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                                    >  2:398836‑M1/1‑115 (MQ=255)                                      cctGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                                 <  8:47797‑M1/148‑38 (MQ=255)                                        tGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatccgcccgtcttcggtcat                                                                                                               >  3:367952‑M1/1‑110 (MQ=255)                                             cTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                           >  5:46112‑M1/1‑105 (MQ=255)                                               gATATGGTTTCATGCCTTCGCTCCTCATCTTGCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg                                                                                                        >  5:155192‑M1/1‑103 (MQ=255)                                                  atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtt                                                                                                      >  2:231321‑M1/1‑100 (MQ=255)                                                   tGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCCTCAGTCGCCTT‑AAAAAACAGTTTGCCAGCGCCGCCTTCTGCcgtcaactgcacttcaatgatgcgcccgtcttaggtcatcactaagtaca                                                                                                    >  3:49601‑M1/1‑99 (MQ=255)                                                   tGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                                     <  4:28392‑M1/148‑50 (MQ=255)                                                     gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatg                                                                                                  >  6:54398‑M1/1‑97 (MQ=255)                                                      tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt                                                                                                 <  3:67858‑M1/149‑54 (MQ=255)                                                      tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt                                                                                                 >  7:157825‑M1/1‑96 (MQ=255)                                                        tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcg                                                                                               >  3:195793‑M1/1‑94 (MQ=255)                                                          aTGCCTTCTCTCGTCATCTTACTTTTTTACAGACAATAAAACTGATACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCTCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                                                                              <  7:319545‑M1/148‑57 (MQ=255)                                                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                                                                              <  4:194302‑M1/148‑57 (MQ=255)                                                             ccTTCGCTCCTCATCTTGCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtct                                                                                           <  6:155192‑M1/148‑60 (MQ=255)                                                                 cGCTGCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc                                                                                       <  7:107363‑M1/148‑64 (MQ=255)                                                                 cGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc                                                                                       >  5:217025‑M1/1‑86 (MQ=255)                                                                   ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg                                                                                     >  5:133718‑M1/1‑83 (MQ=255)                                                                      ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                                 <  8:226929‑M1/149‑70 (MQ=255)                                                                      ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca                                                                                   <  5:54398‑M1/147‑68 (MQ=255)                                                                           cTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcacaacgatcatgtcggtctctgcggcagagtctt                                                                            >  1:77380‑M1/1‑75 (MQ=255)                                                                              aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtc                                                                              <  6:217025‑M1/145‑73 (MQ=255)                                                                               cTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                        <  4:288907‑M1/149‑79 (MQ=255)                                                                               cTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctccgcggcagagtcttcaac                                                                        <  8:388962‑M1/149‑79 (MQ=255)                                                                                  ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcatgtcggtctctgcggcagaggcttcaacgta                                                                     >  2:36228‑M1/1‑68 (MQ=255)                                                                                    cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtat                                                                    <  3:259425‑M1/148‑83 (MQ=255)                                                                                       cAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGGCAGGGCCGCCTTCTGCcgtcccgtgcacttctatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgaggcagagtcttcaacgtattc                                                                  <  1:36228‑M1/147‑85 (MQ=255)                                                                                        aGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccag                                                               >  3:325795‑M1/1‑62 (MQ=255)                                                                                        aGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                                  >  5:178519‑M1/1‑62 (MQ=255)                                                                                        aGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                                  >  5:237894‑M1/1‑62 (MQ=255)                                                                                        aGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                                  >  5:244683‑M1/1‑62 (MQ=255)                                                                                        aGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                                  >  6:359075‑M1/1‑62 (MQ=255)                                                                                        aGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                                  >  6:255133‑M1/1‑62 (MQ=255)                                                                                         gACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctt                                                                                                                      <  8:138733‑M1/93‑33 (MQ=255)                                                                                         gACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctt                                                                                                                      >  7:138733‑M1/1‑61 (MQ=255)                                                                                          aCAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                                  >  6:248597‑M1/1‑60 (MQ=255)                                                                                           cAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc                                                            <  5:248597‑M1/149‑91 (MQ=255)                                                                                           cAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc                                                            <  8:157825‑M1/149‑91 (MQ=255)                                                                                            aaaaaaaaGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcg                                                           >  1:184286‑M1/1‑58 (MQ=255)                                                                                            aaaaaaaaGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcg                                                           >  3:94210‑M1/1‑58 (MQ=255)                                                                                            aaaaaaaaGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcg                                                           <  4:367952‑M1/149‑92 (MQ=255)                                                                                            aaaaaaaaGGCGACTCATCAGTCGCCTA‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcg                                                           >  4:67817‑M1/1‑58 (MQ=255)                                                                                              aaaaaaGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagattgc                                                          >  1:4372‑M1/1‑56 (MQ=255)                                                                                                 aaaGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagattgcaaac                                                      <  2:4372‑M1/149‑97 (MQ=255)                                                                                                       gACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttc                                                >  1:241631‑M1/1‑47 (MQ=255)                                                                                                          tcatcaGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgcc                                             >  7:346479‑M1/1‑44 (MQ=255)                                                                                                            atcaGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgt                                           >  3:160020‑M1/1‑42 (MQ=255)                                                                                                            atcaGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgt                                           <  2:401863‑M1/149‑108 (MQ=255)                                                                                                            atcaGTCGCCAT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGAcgtcccctgcacttcaatgaagcgcccgtcttcggtcatcactacgttcaagtcggtctctgcggcagagtcttcaacgtattccacatcgcaaaccgcttcgccgt                                           >  5:189042‑M1/1‑42 (MQ=255)                                                                                                             tcaGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatt                                                                   <  5:246521‑M1/124‑84 (MQ=255)                                                                                                             tcaGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatt                                                                   >  6:246521‑M1/1‑41 (MQ=255)                                                                                                             tcaGTCGCATT‑AAAATTGAGTTTGGCAGCGCCGCATTCTGCcgtcccctggacttcaatgatgcgcccgtcttctgtcatcactacgttcatgtcggtctcagcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtt                                          <  3:22121‑M1/149‑109 (MQ=255)                                                                                                                    ccTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaatt                                   <  8:346479‑M1/149‑116 (MQ=255)                                                                                                                     cTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                                  <  4:325795‑M1/149‑117 (MQ=255)                                                                                                                     cTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                                  <  6:237894‑M1/149‑117 (MQ=255)                                                                                                                       t‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcc                                 >  8:121958‑M1/1‑31 (MQ=255)                                                                                                                          aaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                               <  6:46112‑M1/148‑120 (MQ=255)                                                                                                                           aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgaca                             <  5:255133‑M1/149‑122 (MQ=255)                                                                                                                             aTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacag                            >  4:115100‑M1/1‑26 (MQ=255)                                                                                                                                  tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcc                                 <  6:174202‑M1/138‑118 (MQ=255)                                                                                                                                  tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatagcaaaccgcttcgccgttcacaattcc                                 >  5:174202‑M1/1‑21 (MQ=255)                                                                                                                                    tGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg                    >  3:181848‑M1/1‑19 (MQ=255)                                                                                                                                    tGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgc                     <  1:398836‑M1/148‑130 (MQ=255)                                                                                                                                           gccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaacctgcggctacca             >  5:388465‑M1/1‑12 (MQ=255)                                                                                                                                             cgccTTCTGCcttcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcatagtcttcaacgtattacagatcgcaaacctcttcgccgttcacaattccgacagaaactgcggctaccata           <  2:218097‑M1/149‑140 (MQ=255)                                                                                                                                              gccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc          >  7:291118‑M1/1‑9 (MQ=255)                                                                                                                                               ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccc         >  7:335003‑M1/1‑8 (MQ=255)                                                                                                                                               ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccc         <  6:178519‑M1/149‑142 (MQ=255)                                                                                                                                                   cTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctt       <  4:160020‑M1/147‑144 (MQ=255)                                                                                                                                                   cTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctt       <  3:115100‑M1/147‑144 (MQ=255)                                                                                                                                                    tGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttca    >  2:205696‑M1/1‑3 (MQ=255)                                                                                                                                                     gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcat   >  4:197572‑M1/1‑2 (MQ=255)                                                                                                                                                      ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatc  <  1:231321‑M1/149‑149 (MQ=255)                                                                                                                                                      ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatc  >  1:162804‑M1/1‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     AACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTT‑AAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGC  >  NC_000913/3815710‑3816006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑