| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2304902 | 5 (0.160) | 9 (0.380) +CTACGGGGTGGAGCACTTCACAGCGGTGTAGGC |
5/182 | 2.5 | 71.0% | noncoding (486/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2305065 | NA (NA) | noncoding (649/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
CGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGC > NC_000913/2304755‑2305049 | cGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACa > 1:160544/1‑149 (MQ=255) ttACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGtt > 6:39699/1‑149 (MQ=33) gccgcATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCt > 6:89250/1‑149 (MQ=32) cgcATCCGACATCCAACGTCCGTGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGa < 2:36852/149‑1 (MQ=17) tCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaacc < 7:17949‑M1/109‑68 (MQ=255) tCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaacc > 8:17949‑M1/1‑42 (MQ=255) tCGGATAAGGCGGTTACGCCGCATCCGACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcctcaggcaaccggctcggacgtt > 7:111440‑M1/1‑29 (MQ=255) tCGGATAAGGCGGTTACGCCGCATCCGACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcggacgtt > 7:111439‑M1/1‑29 (MQ=255) tCGGATAAGGCGGTTACGCCGCATCCGACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcggacgtt < 8:111439‑M1/108‑80 (MQ=255) tCGGATAAGGCGGTTACGCCGCATCCGACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcggacgtt < 8:111440‑M1/108‑80 (MQ=255) gATAAGGCGGTTACGCCGCATCCAACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttatccgacctacggggtg > 5:89250‑M1/1‑26 (MQ=255) tCCGACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaac < 7:99898‑M1/72‑67 (MQ=255) tCCGACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaac > 8:99898‑M1/1‑6 (MQ=255) aCATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGc > 1:78099/1‑149 (MQ=37) | CGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGC > NC_000913/2304755‑2305049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |