| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 75,779 | Δ14 bp | coding (1508‑1521/1656 nt) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 75779 | 75792 | 14 | 21 [0] | [0] 23 | sgrR | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 75778 | 0 (0.000) | 19 (0.630) | 17/232 | 0.9 | 100% | coding (1522/1656 nt) | sgrR | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| ? | NC_000913 | 75793 = | 0 (0.000) | coding (1507/1656 nt) | sgrR | transcriptional DNA‑binding transcriptional activator of sgrS sRNA | |||||
TGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGCCAGTCAATGGGAATGCAATGTTGTAGCAGTGGCACTTCGCATAAATGTGCGAAAACAGAGAAGTCCAGCGGCAGGGTA > NC_000913/75647‑75923 | tGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattc < 1:109611‑M1/149‑18 (MQ=255) aaaCCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattc > 6:151814‑M1/1‑117 (MQ=255) aaaCCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattc < 5:151814‑M1/134‑18 (MQ=255) aCCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgcca < 2:120725‑M1/149‑35 (MQ=255) gAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagt < 3:110647‑M1/144‑58 (MQ=255) gAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagt > 4:110647‑M1/1‑87 (MQ=255) agtatgcGCGGCCTGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatg > 3:12396‑M1/4‑80 (MQ=255) gCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtag > 8:119453‑M1/1‑69 (MQ=255) gcATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgc > 5:15184‑M1/1‑64 (MQ=255) gcATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgc < 6:15184‑M1/117‑54 (MQ=255) tGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttc > 3:50546‑M1/1‑58 (MQ=255) aTCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaaaa > 3:28640‑M1/1‑41 (MQ=255) ccAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaaaacagag < 4:50546‑M1/149‑114 (MQ=255) aGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgca < 7:21048‑M1/128‑95 (MQ=255) aGTGGTGCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgca > 8:21048‑M1/1‑34 (MQ=255) gtgCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaa < 7:43501‑M1/136‑107 (MQ=255) gtgCAATAATGGCACCATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaa > 8:43501‑M1/1‑30 (MQ=255) cATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcga > 5:92926‑M1/1‑15 (MQ=255) cATCGCTTTGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcga < 6:92926‑M1/120‑106 (MQ=255) tGCTGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaaaacagagaagtccagcggcagggtaaagttggcgc < 4:12396‑M1/148‑142 (MQ=255) tGGCaccagttcgccagattcatctcgccattgcgccagcgagcagcgtcggcttgccagtcaatgggaatgcaatgttgtagcagtggcacttcgcataaatgtgcgaaaacagagaagtccagcggcagggtaaagttggcgctgtt < 7:119453‑M1/149‑146 (MQ=255) | TGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGCCAGTCAATGGGAATGCAATGTTGTAGCAGTGGCACTTCGCATAAATGTGCGAAAACAGAGAAGTCCAGCGGCAGGGTA > NC_000913/75647‑75923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |