Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)32 (0.990) 21/248 0.7 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)41 (1.270) 25/248 0.4 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

CAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTAT  >  NC_000913/1979341‑1979637
                                                                                                                                                    |                                                                                                                                                    
aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatggctgaggcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                      >  3:5712‑M1/146‑149 (MQ=255)
    cAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACAGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACAAGATAAGATATTTTTAAACAGACACTTACCGAACAACAAACTAAgg                                                                                                                                                    >  5:151073‑M1/1‑145 (MQ=255)
             gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACa                                                                                                                                             <  1:137100‑M1/13‑1 (MQ=255)
             gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACa                                                                                                                                             >  2:137100‑M1/133‑145 (MQ=255)
             aaCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaac                                                                                                                                         <  8:65797‑M1/149‑14 (MQ=255)
                  aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                                     >  8:125881‑M1/128‑148 (MQ=255)
                       atCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctga                                                                                                                               >  6:36714‑M1/1‑126 (MQ=255)
                           aaaTTGTATGTTGCGCACAGTCAAAATCACTCACCTTAAATAATCATCTGCTATTAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAtgaaggtgcgatcatgtcccttatatg                                                                                                                           <  6:151073‑M1/149‑28 (MQ=255)
                                     ttGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgag                                                                                                                         >  8:135737‑M1/1‑112 (MQ=255)
                                     ttGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgag                                                                                                                         <  7:135737‑M1/141‑30 (MQ=255)
                                     taaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtt                                                                                                                  <  7:88873‑M1/40‑1 (MQ=255)
                                       gcgcACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                                                                               >  6:27905‑M1/1‑110 (MQ=255)
                                                            ccGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag                                                                                          >  7:38401‑M1/1‑89 (MQ=255)
                                                            ccGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                               <  6:119378‑M1/96‑8 (MQ=255)
                                                            ccGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                               >  5:119378‑M1/1‑89 (MQ=255)
                                                             cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                         <  5:36714‑M1/149‑62 (MQ=255)
                                                                ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatat                                                                                               >  3:27216‑M1/82‑140 (MQ=255)
                                                                ggagaaaaaatcggctcaaaaatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatat                                                                                               <  4:27216‑M1/59‑1 (MQ=255)
                                                                 aataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                                      <  5:27905‑M1/148‑65 (MQ=255)
                                                                  agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                                                                    >  8:88873‑M1/80‑149 (MQ=255)
                                                                   taatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat                                                                                   <  8:38401‑M1/149‑68 (MQ=255)
                                                                    aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat                                                                                   >  8:93420‑M1/1‑81 (MQ=255)
                                                                             cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAATCAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaaatccctgatatgagatc                                                                                                                      <  6:50830‑M1/104‑33 (MQ=255)
                                                                             cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAATCAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaaatccctgatatgagatc                                                                                                                      >  5:50830‑M1/1‑72 (MQ=255)
                                                                             cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                           <  7:93420‑M1/147‑76 (MQ=255)
                                                                                taaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtt                                                                                                                 <  1:143298‑M1/106‑38 (MQ=255)
                                                                                taaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtt                                                                                                                 >  2:143298‑M1/1‑69 (MQ=255)
                                                                                          gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgag                                                                       <  3:133268‑M1/83‑1 (MQ=255)
                                                                                          gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgag                                                                       >  4:133268‑M1/56‑138 (MQ=255)
                                                                                           aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                     >  8:75124‑M1/55‑59 (MQ=255)
                                                                                           aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                     <  7:75124‑M1/5‑1 (MQ=255)
                                                                                                   tgactgagtcagccgagaagaatttccccgcttattcgtaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCt                                                    <  6:110184‑M1/102‑1 (MQ=255)
                                                                                                        cAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                               >  5:154514‑M1/1‑45 (MQ=255)
                                                                                                             agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATg                                                                            >  2:20361‑M1/37‑114 (MQ=255)
                                                                                                             agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATg                                                                            <  1:20361‑M1/78‑1 (MQ=255)
                                                                                                               ccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                           >  4:82863‑M1/35‑65 (MQ=255)
                                                                                                               ccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                           <  3:82863‑M1/31‑1 (MQ=255)
                                                                                                                cgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                                        <  2:141783‑M1/50‑1 (MQ=255)
                                                                                                                cgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                                        >  1:141783‑M1/34‑83 (MQ=255)
                                                                                                                    aagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAt                                  <  2:99189‑M1/120‑1 (MQ=255)
                                                                                                                         tttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat                             >  1:99189‑M1/25‑149 (MQ=255)
                                                                                                                            aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                                                                                       >  8:133928‑M1/1‑25 (MQ=255)
                                                                                                                              ccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCa                        <  7:112921‑M1/130‑1 (MQ=255)
                                                                                                                                        gcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtga              <  3:42485‑M1/140‑1 (MQ=255)
                                                                                                                                           aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                                  >  1:117394‑M1/1‑10 (MQ=255)
                                                                                                                                           aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                                  <  2:117394‑M1/78‑69 (MQ=255)
                                                                                                                                            acaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc          >  6:135125‑M1/1‑9 (MQ=255)
                                                                                                                                             caaACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                                  >  2:8287‑M1/1‑8 (MQ=255)
                                                                                                                                             caaACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                                  <  1:8287‑M1/44‑37 (MQ=255)
                                                                                                                                                cCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTaa      >  5:110184‑M1/2‑149 (MQ=255)
                                                                                                                                                 cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagtgttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc     <  7:38502‑M1/149‑146 (MQ=255)
                                                                                                                                                 cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc     >  3:87962‑M1/1‑4 (MQ=255)
                                                                                                                                                 cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt      <  6:74008‑M1/148‑145 (MQ=255)
                                                                                                                                                 cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                        >  8:14147‑M1/1‑4 (MQ=255)
                                                                                                                                                  tAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                                      >  7:94608/1‑67 (MQ=255)
                                                                                                                                                  tAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                                      <  8:94608/67‑1 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag                <  6:54315‑M1/136‑135 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag                >  5:54315‑M1/1‑2 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                                >  2:120550‑M1/1‑2 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                                <  1:120550‑M1/72‑71 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccg  >  2:8875‑M1/1‑1 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc    <  7:1243‑M1/147‑147 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc                         >  7:125625‑M1/1‑1 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc                         <  8:125625‑M1/126‑126 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                                    >  4:122568‑M1/1‑1 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                        <  4:60812‑M1/63‑63 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                        >  3:60812‑M1/1‑1 (MQ=255)
                                                                                                                                                    aTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                                        >  4:63550/1‑79 (MQ=255)
                                                                                                                                                    aTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                                        <  3:63550/79‑1 (MQ=255)
                                                                                                                                                    aTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGattaatta   >  5:13391/1‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTAT  >  NC_000913/1979341‑1979637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.