breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,391,9300CT51.7% ‑4.4 / 38.4 29I109I (ATC→ATTornoligoribonuclease
*NC_0009131,555,7810GC25.9% 47.2 / 19.0 27intergenic (‑112/+45)maeA/sramalate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein
*NC_0009131,555,7820CT25.9% 41.3 / 14.0 27intergenic (‑113/+44)maeA/sramalate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein
*NC_0009131,113,5440GA25.7% 57.6 / 18.3 35intergenic (+138/‑35)opgH/yceKOPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
*NC_0009131,113,5460TA25.7% 56.2 / 21.2 35intergenic (+140/‑33)opgH/yceKOPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
*NC_000913324,5800CG25.0% 50.7 / 10.7 24intergenic (+127/+116)ykgG/ykgHLutC family protein; putative electron transport chain YkgEFG component/putative inner membrane protein
*NC_0009131,555,7830AG25.0% 41.6 / 13.8 28intergenic (‑114/+43)maeA/sramalate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein
*NC_0009131,555,7840GC25.0% 48.8 / 18.8 28intergenic (‑115/+42)maeA/sramalate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein
*NC_0009132,217,2430GA25.0% 37.2 / 10.8 24S55S (AGC→AGTyehXputative ABC transporter ATPase
*NC_0009132,906,6070CT24.2% 58.6 / 14.3 33intergenic (+24/+36)ygcG/enoTPM domain protein, putative phosphatase/enolase
*NC_0009134,296,0600CT24.2% 57.1 / 16.2 34intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009131,113,5480TC22.5% 74.7 / 19.0 40intergenic (+142/‑31)opgH/yceKOPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein

Marginal new junction evidence (lowest skew 10 of 70 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3302505 =23 (0.710)5 (0.160) 5/234 3.2 17.6% coding (17/879 nt) yhbV U32 peptidase family protein
?NC_000913 3302527 = 25 (0.820)coding (39/879 nt) yhbV U32 peptidase family protein
* ? NC_000913 = 211384636 (1.120)5 (0.160) 5/240 3.2 12.5% coding (482/894 nt) wcaN putative regulatory subunit for GalU
?NC_000913 = 2113887 35 (1.120)coding (441/894 nt) wcaN putative regulatory subunit for GalU
* ? NC_000913 715264 =NA (NA)5 (0.160) 5/234 3.2 NA noncoding (1/98 nt) RIP65 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP65 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 715289 = NA (NA)noncoding (26/98 nt) RIP65 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP65 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 14104131 (0.960)5 (0.160) 5/238 3.2 14.3% coding (185/2391 nt) gcd glucose dehydrogenase
?NC_000913 = 141048 30 (0.970)coding (178/2391 nt) gcd glucose dehydrogenase
* ? NC_000913 3502298 =34 (1.060)5 (0.160) 5/248 3.3 12.2% intergenic (+8/‑42) frlB/frlC fructoselysine‑6‑P‑deglycase/fructoselysine 3‑epimerase
?NC_000913 3502320 = 38 (1.180)intergenic (+30/‑20) frlB/frlC fructoselysine‑6‑P‑deglycase/fructoselysine 3‑epimerase
* ? NC_000913 = 455048336 (1.120)4 (0.140) 4/226 3.4 10.3% coding (814/1344 nt) gntP fructuronate transporter
?NC_000913 = 4550562 37 (1.260)coding (735/1344 nt) gntP fructuronate transporter
* ? NC_000913 4474083 =38 (1.180)4 (0.140) 4/226 3.4 11.5% intergenic (‑30/‑41) bdcA/bdcR c‑di‑GMP‑binding biofilm dispersal mediator protein/transcriptional repressor for divergent bdcA
?NC_000913 4474127 = 27 (0.920)coding (4/594 nt) bdcR transcriptional repressor for divergent bdcA
* ? NC_000913 3852834 =23 (0.710)4 (0.140) 4/226 3.4 16.7% intergenic (‑50/+56) ilvB/ivbL acetolactate synthase 2 large subunit/ilvB operon leader peptide
?NC_000913 3852867 = 19 (0.650)intergenic (‑83/+23) ilvB/ivbL acetolactate synthase 2 large subunit/ilvB operon leader peptide
* ? NC_000913 947028 =32 (0.990)4 (0.140) 4/220 3.4 12.4% intergenic (+9/‑201) ycaD/ycaM putative MFS transporter, inner membrane protein/putative transporter
?NC_000913 947064 = 28 (0.980)intergenic (+45/‑165) ycaD/ycaM putative MFS transporter, inner membrane protein/putative transporter
* ? NC_000913 4347465 =42 (1.310)4 (0.130) 4/234 3.5 9.7% coding (1280/1341 nt) dcuB C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor
?NC_000913 4347497 = 35 (1.150)coding (1248/1341 nt) dcuB C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor