New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2769764	104 (1.100)	4 (0.040)	4/248	NT	4.0%	coding (62/702 nt)	yfjR	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
	?	NC_000913	= 2769802	94 (1.050)					coding (100/702 nt)	yfjR	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
Rejected: Frequency below/above cutoff threshold.

AAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2769610‑2769764 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagccgCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGACAGCCAGCCGGTCATGGCGGCGTTCTGCCTGTGTCATGAGAGATTCTCCAGGAAAGTTAACTGACTGAAAATGATGTGATTACT  <  NC_000913/2769802‑2769656                                                                                                                                                                                                                                                                                                                AAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTTAAGTAATCAGATCATTTTCAGTCAGTTAACTTTCATGGAGAATCTCTCATGACACAGGCAGAACGCCGCAATGACCGGCTGGCTGTCAGGCTGTCACTGATAAT                                                                                                                                                           >  2:96776/1‑149                                          TTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAAC                                                                                                                   >  6:354047/1‑148                                                GTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGG                                                                                                            <  5:354047/149‑1                                                                            TTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCT                                                                                                          >  5:309258/1‑123                                                                            TTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCT                                                                                                          <  6:309258/123‑1                                                                                                                                                       AGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGACAGCCAGCCGGTCATGGCGGCGTTCTGCCTGTGTCATGAGAGATTCTCCAGGAAAGTTAACTGACTGAAAATGATGTGA       <  1:232686/147‑1                                                                                                                                                       AGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGACAGCCAGCCGGTCATGGCGGCGTTCTGCCTGTGTCATGAGAGATTCTCCAGGAAAGTTAACTGACTGAAAATGATGTGA       <  2:370207/147‑1                                                                                                                                                       AGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGACAGCCAGCCGGTCATGGCGGCGTTCTGCCTGTGTCATGAGAGATTCTCCAGGAAAGTTAACTGACTGAAAATGATGTGA       <  2:46221/147‑1                                                                                                                                                       AGCCGCCAGTTTGCGCACGCGCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGACAGCCAGCCGGTCATGGCGGCGTTCTGCCTGCGGCATGAGAGATTCTCCAGGAAAGTTAACTGACTGAAAATGATGTGAT      <  8:374430/148‑1                                                                                                                                                        GCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGCCGGCTGATTATCAGTGACAGCCTGACAGCCAGCCGGTCATGGCGGCGTTCTGCCTGTGTCATGAGAGATTCTCCAGTAAAGTTAACTGACTGAAAATGATGTGATTA    <  6:223874/149‑1                                                                                                                                                         CCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGACAGCCAGCCGGTCATGGCGGCGTTCTGCCTGTGTCATGAGAGATTCTCCAGGAAAGTTAACTGACTGAAAATGATGTGATTAC   <  1:123564/149‑1                                                                                                                                                          CGCCAGTTTGCGCACTCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGACAGCCAGCCGGTCATGGCGGCGTTCTGCCTGTGTCATGAGAGATTCTCCAGGAAAGTTAACTGACTGAAAATGATGTGATTACT  <  1:3149/149‑1                                                                                                                                                                                                                                                                                                                AAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2769610‑2769764 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagccgCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGACAGCCAGCCGGTCATGGCGGCGTTCTGCCTGTGTCATGAGAGATTCTCCAGGAAAGTTAACTGACTGAAAATGATGTGATTACT  <  NC_000913/2769802‑2769656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.