Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)145 (1.460) 87/280 0.1 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)143 (1.440) 80/280 0.2 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 274 total aligned reads displayed.

TAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAAT  >  NC_000913/1979338‑1979634
                                                                                                                                                    |                                                                                                                                                    
aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagcaaaaatcggcgcaaacatgaagaaatgaaatgactgagtcagacgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      <  5:404219‑M1/1‑1 (MQ=255)
aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      <  1:148358‑M1/1‑1 (MQ=255)
 aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                     >  1:37769‑M1/148‑149 (MQ=255)
 aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                     >  6:363455‑M1/148‑149 (MQ=255)
   aactggggataacgcctttaatggcgaagaaagggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaatcatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCtat                                                                                                                                                   >  1:43417‑M1/146‑148 (MQ=255)
    aaGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAg                                                                                                                                                  <  3:391031‑M1/149‑2 (MQ=255)
     ctggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgagtgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                                 >  4:253732‑M1/144‑149 (MQ=255)
     ctggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                                 >  7:384285‑M1/144‑149 (MQ=255)
     ctggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                                 >  6:273481‑M1/144‑149 (MQ=255)
        gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgattcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                              <  4:326207‑M1/9‑1 (MQ=255)
        gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                              >  5:210966‑M1/141‑149 (MQ=255)
        aaaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaag                                                                                                                                              <  7:206978‑M1/149‑6 (MQ=255)
                gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaag                                                                                                                                       <  7:73569‑M1/16‑1 (MQ=255)
                aaCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaac                                                                                                                                      <  3:315083‑M1/149‑14 (MQ=255)
                aaCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaac                                                                                                                                      <  8:160845‑M1/149‑14 (MQ=255)
                aaCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                       >  8:42576‑M1/1‑136 (MQ=255)
                  cAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa                                                                                                                                    <  5:246069‑M1/149‑16 (MQ=255)
                     gAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtc                                                                                                                                 >  1:142459‑M1/1‑131 (MQ=255)
                     aaatggagaagaatctgtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgacttagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                                   >  5:313877‑M1/128‑147 (MQ=255)
                       atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                   <  4:274867‑M1/4‑1 (MQ=255)
                       atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                   >  3:274867‑M1/126‑129 (MQ=255)
                       ataatCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                               <  8:265621‑M1/149‑21 (MQ=255)
                          gcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                            <  1:227564‑M1/27‑1 (MQ=255)
                             aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                     <  7:297318‑M1/2‑1 (MQ=255)
                             aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCa                                                                                                                         >  8:434462‑M1/120‑149 (MQ=255)
                              aaaTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAtgaaggtgcgaacaagtccaggatatg                                                                                                                        >  2:347038‑M1/1‑122 (MQ=255)
                               gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAAc                                                                                                                       >  4:110451‑M1/118‑149 (MQ=255)
                               aaTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatat                                                                                                                         >  5:388130‑M1/1‑121 (MQ=255)
                                  acggtctaagtaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                     >  7:259408‑M1/115‑116 (MQ=255)
                                    ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                                  >  2:7954‑M1/113‑149 (MQ=255)
                                      tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgt                                                                                                                >  2:227564‑M1/111‑149 (MQ=255)
                                       ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgt                                                                                                                <  2:290086‑M1/39‑1 (MQ=255)
                                          gcgcACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa                                                                                                                                    >  2:51664‑M1/1‑110 (MQ=255)
                                           cgcACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgt                                                                                                           >  3:191827‑M1/1‑109 (MQ=255)
                                            taggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagcagagaagaatttcccctcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGa                                                                                                          >  1:106825‑M1/105‑149 (MQ=255)
                                              acaGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                            >  3:349218‑M1/1‑106 (MQ=255)
                                               gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAt                                                                                                       <  7:425542‑M1/48‑1 (MQ=255)
                                                    aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag                                                                                                  >  1:57367‑M1/1‑100 (MQ=255)
                                                    aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatc                                                                                                                   <  1:290553‑M1/132‑33 (MQ=255)
                                                    aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccct                                                                                                                              >  5:148642‑M1/1‑100 (MQ=255)
                                                    aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccct                                                                                                                              <  6:148642‑M1/121‑22 (MQ=255)
                                                    aaaaTAACTCAACGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                                                                                   <  8:112840‑M1/148‑49 (MQ=255)
                                                      caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATgttttt                                                                                                 >  4:352649‑M1/95‑147 (MQ=255)
                                                      caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                                 >  1:134326‑M1/95‑148 (MQ=255)
                                                       aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCATAAATCAACTTAATGTTAATGATAtgtttttc                                                                                                >  4:225225‑M1/94‑146 (MQ=255)
                                                       aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                               <  1:311858‑M1/56‑1 (MQ=255)
                                                        aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                                                                              >  1:240392‑M1/93‑149 (MQ=255)
                                                              aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa                                                                                          >  4:68650‑M1/1‑90 (MQ=255)
                                                                cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCAGAACAAACTAAggaaggtgcaaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                      <  5:65668‑M1/149‑62 (MQ=255)
                                                                cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                      <  7:351267‑M1/149‑62 (MQ=255)
                                                                 gTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                     <  8:310268‑M1/149‑63 (MQ=255)
                                                                 gTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                     <  3:136262‑M1/149‑63 (MQ=255)
                                                                  gggagaaaacatcggctcacccctgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAACAAAGGCAACAATCAACATAATGTTAATGAAATGTTTTACATATATTAACCa                                                                                    >  4:78890‑M1/83‑149 (MQ=255)
                                                                  gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                      >  6:394972‑M1/83‑147 (MQ=255)
                                                                    gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACt                                                                                  <  2:151709‑M1/69‑1 (MQ=255)
                                                                     agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                                                                 >  2:181146‑M1/80‑149 (MQ=255)
                                                                         tcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                             <  8:343564‑M1/149‑71 (MQ=255)
                                                                            atcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATAc                                                                                                                                           >  8:15870‑M1/73‑84 (MQ=255)
                                                                                cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                                                                       >  5:265810‑M1/1‑72 (MQ=255)
                                                                                cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag                                                                          <  3:68650‑M1/145‑74 (MQ=255)
                                                                                 tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                             >  5:191068‑M1/1‑71 (MQ=255)
                                                                                 ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTACCCACTTGTTTAATGCg                                                                       <  2:109683‑M1/80‑1 (MQ=255)
                                                                                  tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCg                                                                       <  6:320645‑M1/80‑1 (MQ=255)
                                                                                  ataaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatga                                                                                                                       >  7:160084‑M1/1‑70 (MQ=255)
                                                                                    aaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                                                                  >  6:170519‑M1/1‑68 (MQ=255)
                                                                                    aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTaa                                                                                       >  2:369461‑M1/65‑128 (MQ=255)
                                                                                       catgaagaaatgaaatgactgagtcagccgagaagaatttccccgattattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGGAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCa                                                               >  2:294921‑M1/62‑149 (MQ=255)
                                                                                        atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAACAACTTAATGTTAATGAAATGTTTTAAATATATTAACCACTTGTTTAATGCGGAGAATCAg                                                              <  8:196310‑M1/89‑1 (MQ=255)
                                                                                           aagaaatgaaatgacttagtcagccgagaagaatttcgccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATTAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                            >  1:389569‑M1/58‑148 (MQ=255)
                                                                                           aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                            <  5:112485‑M1/91‑1 (MQ=255)
                                                                                              tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                        <  7:436992‑M1/149‑92 (MQ=255)
                                                                                              tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                             <  7:167919‑M1/96‑39 (MQ=255)
                                                                                                    aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                                     <  1:274499‑M1/82‑1 (MQ=255)
                                                                                                        actgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTta                                               >  2:276523‑M1/45‑148 (MQ=255)
                                                                                                          tgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                   >  2:250148‑M1/43‑46 (MQ=255)
                                                                                                          tgagtcagccgagaagaatttccccgcttattagcaccttaaCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATaa                                            <  1:25592‑M1/107‑1 (MQ=255)
                                                                                                             gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                         <  2:424328‑M1/149‑107 (MQ=255)
                                                                                                              tcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTa                                         <  2:213509‑M1/110‑1 (MQ=255)
                                                                                                                     agaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGa                                  <  7:152014‑M1/117‑1 (MQ=255)
                                                                                                                      gaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa                                >  1:103985‑M1/31‑149 (MQ=255)
                                                                                                                        agaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAtt                              >  3:232754‑M1/29‑149 (MQ=255)
                                                                                                                         gaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATta                             >  1:279968‑M1/28‑149 (MQ=255)
                                                                                                                          aatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtat                            >  2:273038‑M1/27‑149 (MQ=255)
                                                                                                                              cAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                        >  8:373314‑M1/1‑26 (MQ=255)
                                                                                                                                 ccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGt                                                             >  8:355754‑M1/20‑109 (MQ=255)
                                                                                                                                    cttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTAc                                        <  6:19219‑M1/111‑1 (MQ=255)
                                                                                                                                       attcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGAt                       >  2:13269‑M1/14‑141 (MQ=255)
                                                                                                                                        ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACAGTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAg              >  7:111432‑M1/13‑149 (MQ=255)
                                                                                                                                          gCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga            <  6:265810‑M1/149‑136 (MQ=255)
                                                                                                                                            acaacaAACTACggaaggtgcgaacaagtccctcatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt          <  6:103318‑M1/149‑138 (MQ=255)
                                                                                                                                             accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgatt         >  7:340290‑M1/8‑149 (MQ=255)
                                                                                                                                             accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACAATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgatt         <  8:170496‑M1/142‑1 (MQ=255)
                                                                                                                                              aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt        >  5:345530‑M1/1‑10 (MQ=255)
                                                                                                                                               cttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtga           <  1:153602‑M1/140‑1 (MQ=255)
                                                                                                                                               acaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgactcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc       <  4:173809‑M1/149‑141 (MQ=255)
                                                                                                                                                caaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct      >  5:261499‑M1/1‑8 (MQ=255)
                                                                                                                                                    cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc  >  8:233018‑M1/1‑4 (MQ=255)
                                                                                                                                                    cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc  >  1:164065‑M1/1‑4 (MQ=255)
                                                                                                                                                    cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc  >  6:237161‑M1/1‑4 (MQ=255)
                                                                                                                                                    cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                            >  1:18535‑M1/1‑4 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAAT  >  NC_000913/1979338‑1979634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.