| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1972772 = | 42 (1.220) | 6 (0.190) | 6/238 | 2.7 | 13.8% | intergenic (‑81/+64) | tar/cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein |
| ? | NC_000913 | 1972820 = | 36 (1.120) | intergenic (‑129/+16) | tar/cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTAACAGTGCGAATACCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAATC > NC_000913/1972627‑1972914 | tGTAACAGTGCGAATACCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAAtt > 1:132994/1‑149 (MQ=255)ctttcaacagaatatctcactggactgggcgcactgggcgaccggatgttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAAtt > 1:74163‑M1/146‑149 (MQ=255) tcaacagaatatctcactggactgggcgcactgggcgaccggatgttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTg > 1:30687‑M1/143‑147 (MQ=255) caacagaatatctcactggactgggcgcactgggcgaccggatgttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGaa > 7:19638‑M1/142‑148 (MQ=255) aacagaatatctcactggactgggcgcactgggcgaccggatgttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAAtt > 3:24262‑M1/141‑144 (MQ=255) aacagaatatctcactggactgggcgcactgggcgaccggatgttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAAtt < 4:24262‑M1/4‑1 (MQ=255) gAATACCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATa < 6:154873/144‑1 (MQ=255) gAATACCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATa > 5:154873/1‑144 (MQ=255) atatctcactggactgggcgcactgggcgaccggatgttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGAAAt > 4:48120‑M1/135‑143 (MQ=255) atatctcactggactgggcgcactgggcgaccggatgtagattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGAAAt < 3:48120‑M1/9‑1 (MQ=255) tatctcactggactgggcgcactgggcgaccggatgttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGAAAt > 8:150826‑M1/134‑142 (MQ=255) tatctcactggactgggcgcactgggcgaccggatgttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGAAAt < 7:150826‑M1/9‑1 (MQ=255) tctcactggactgggcgcactgggcgaccggatgttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGAAATAAAAAAccc < 5:3767‑M1/18‑1 (MQ=255) cccccAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGa > 5:118953/1‑149 (MQ=255) ccAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGaa > 4:122774/1‑133 (MQ=255) ccAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGaa < 3:122774/133‑1 (MQ=255) gCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCa < 2:132994/149‑1 (MQ=255) cATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATgcgc > 4:144908/1‑144 (MQ=255) cATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATgcgc < 3:144908/144‑1 (MQ=255) aTTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGCTGCGCAGatca > 8:1669/1‑149 (MQ=255) cgcgGATACGGTTAATCCTCAGGCACCTTCCTGACAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGa < 3:22707/149‑1 (MQ=255) ttgattctggtgaacatcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAg > 6:3767‑M1/98‑148 (MQ=255) gATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGaa < 7:1669/149‑1 (MQ=255) ggTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCaa < 6:24013/136‑1 (MQ=255) ggTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCaa > 5:24013/1‑136 (MQ=255) catcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGaaa < 1:153292‑M1/8‑1 (MQ=255) catcgaaaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGaaa > 2:153292‑M1/84‑91 (MQ=255) tAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAAtt > 2:62600/1‑85 (MQ=255) tAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAAtt < 1:62600/85‑1 (MQ=255) aaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGa > 1:134674‑M1/78‑127 (MQ=255) aaaactgctgaacagcgaagagatggcgctgttagatagcgcggcgtcagaagtggcgtaattctcccgatttcctcAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGa < 2:134674‑M1/50‑1 (MQ=255) ccTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACt > 1:70423/1‑148 (MQ=255) gTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTa > 5:105055/1‑148 (MQ=255) gTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTAt < 6:118953/149‑1 (MQ=255) ttGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACtt < 6:88827/133‑1 (MQ=255) ttGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACtt > 5:88827/1‑133 (MQ=255) gATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCCCTATCt > 1:62575/1‑148 (MQ=255) ctcGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCggg < 4:19050/89‑1 (MQ=255) ctcGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCggg > 3:19050/1‑89 (MQ=255) ttATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAgcgc > 1:91803/1‑149 (MQ=255) ttATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAgcgc > 6:70992/1‑149 (MQ=255) ggggAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGtt < 6:105055/149‑1 (MQ=255) tcagaagtggcgtaattctcccgatttcctcAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCAttt < 3:105082‑M1/43‑1 (MQ=255) tcagaagtggcgtaattctcccgatttcctcAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCAttt > 4:105082‑M1/32‑74 (MQ=255) aaaCTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGga > 6:107133/1‑91 (MQ=255) aaaCTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGga < 5:107133/91‑1 (MQ=255) aCTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGTAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATctct < 2:599/135‑1 (MQ=255) aCTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATctct > 1:599/1‑135 (MQ=255) tttATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGa > 7:130548/1‑76 (MQ=255) tttATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGa > 1:178183/1‑76 (MQ=255) tttATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGa < 8:130548/76‑1 (MQ=255) tttATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGa < 2:178183/76‑1 (MQ=255) ttGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCAtct > 1:75809/1‑127 (MQ=255) ttGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCAtct < 2:75809/127‑1 (MQ=255) gCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAAc > 5:82232/1‑109 (MQ=255) gCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAAc < 6:82232/109‑1 (MQ=255) aCCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCAtct > 3:6714/1‑116 (MQ=255) aCCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCAtct < 4:6714/116‑1 (MQ=255) ccgcGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAATc < 2:70423/149‑1 (MQ=255) | TGTAACAGTGCGAATACCCCCAGCACCATTACCAACAGCGTGACTACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAATC > NC_000913/1972627‑1972914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |