New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4412115	60 (1.740)	5 (0.150)	5/244	3.0	8.3%	coding (137/399 nt)	yjfL	UPF0719 family inner membrane protein
	?	NC_000913	= 4412132	54 (1.640)					coding (154/399 nt)	yjfL	UPF0719 family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATACTGGATTCACTTCTTGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGTTACTCGTTTTTGCTGGTGTCAGACTTTATATGCCC  >  NC_000913/4411984‑4412272                                                                                                                                                     |                                                                                                                                             tataCTGGATTCACTTCTTGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCa                                                                                                                                              <  2:194496/149‑1 (MQ=255) tataCTGGATTCACTTCTTGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCa                                                                                                                                              <  7:40570/149‑1 (MQ=255)   taCTGGATTCACTTCTTGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAg                                                                                                                                             <  4:98935/148‑1 (MQ=255)    aCTGGATTCACTTCTTGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCg                                                                                                                                           >  6:107887/1‑149 (MQ=255)             aCTTCTTGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACAttgt                                                                                                                                  >  8:70640/1‑149 (MQ=255)             aCTTCTTGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACAttgt                                                                                                                                  >  6:57817/1‑149 (MQ=255)              cttcttGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACAttgtt                                                                                                                                 <  6:102062/149‑1 (MQ=255)              cttcttGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACAttgtt                                                                                                                                 <  7:70640/149‑1 (MQ=255)                 cttGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTgg                                                                                                                               <  2:23078/148‑1 (MQ=255)                 cttGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTgg                                                                                                                               <  8:272/148‑1 (MQ=255)                    gCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATATTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTa                                                                                                                           >  4:127037/1‑149 (MQ=255)                                  tttttttATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTa                                                                                                              <  5:107887/148‑1 (MQ=255)                                   ttttttATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATc                                                                                                            >  8:8788/1‑149 (MQ=255)                                    tttttATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATc                                                                                                            <  7:8788/148‑1 (MQ=255)                                             gCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGc                                                                                                   >  5:5584/1‑148 (MQ=255)                                                        gTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATc                                                                                                            <  6:64049/128‑1 (MQ=255)                                                        gTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATc                                                                                                            >  5:64049/1‑128 (MQ=255)                                                         tGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGt                                                                                       >  1:161032/1‑148 (MQ=255)                                                           attattTTTCTGTTTATCTATTCTAAAATTACACCTCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGc                                                                                          <  7:92566/143‑1 (MQ=255)                                                           attattTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGc                                                                                          >  8:92566/1‑143 (MQ=255)                                                            ttattTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAg                                                                                    >  4:81662/1‑148 (MQ=255)                                                                   tCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGc                                                                                                      <  1:166257/123‑1 (MQ=255)                                                                   tCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGc                                                                                                      >  2:166257/1‑123 (MQ=255)                                                                   tCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCa                                                                             <  5:57817/148‑1 (MQ=255)                                                                          aTCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATcc                                                                                                           >  3:59401/1‑111 (MQ=255)                                                                          aTCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATcc                                                                                                           <  4:59401/111‑1 (MQ=255)                                                                          aTCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTAttt                                                                     >  2:164437/1‑149 (MQ=255)                                                                            cTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGcaat                                                                                                >  3:83352/1‑120 (MQ=255)                                                                            cTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGcaat                                                                                                <  4:83352/120‑1 (MQ=255)                                                                               ttCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCt                                                                <  3:127037/149‑1 (MQ=255)                                                                                  tAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCGGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTggg                                                             >  6:111133/1‑149 (MQ=255)                                                                                  tAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTggg                                                             >  7:7199/1‑149 (MQ=255)                                                                                       ttACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGt                                                                                                                        >  1:170723/1‑85 (MQ=255)                                                                                       ttACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGt                                                                                                                        <  2:170723/85‑1 (MQ=255)                                                                                          cacCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTgg                                                                                                                               >  6:154778/1‑75 (MQ=255)                                                                                          cacCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTgg                                                                                                                               <  5:154778/75‑1 (MQ=255)                                                                                          cacCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGAtt                                                     <  8:7199/149‑1 (MQ=255)                                                                                           acCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATc                                                                                                            <  1:101757/93‑1 (MQ=255)                                                                                           acCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATc                                                                                                            >  2:101757/1‑93 (MQ=255)                                                                                             cGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCa                                                  >  2:4920/1‑149 (MQ=255)                                                                                                acaACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTg                                               <  6:5584/149‑1 (MQ=255)                                                                                                acaACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTg                                               <  1:164437/149‑1 (MQ=255)                                                                                                  aaCGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGt                                             >  2:129913/1‑149 (MQ=255)                                                                                                  aaCGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGt                                             >  5:124701/1‑149 (MQ=255)                                                                                                    cGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTAc                                                                                                                          <  7:77368/70‑1 (MQ=255)                                                                                                    cGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTAc                                                                                                                          >  8:77368/1‑70 (MQ=255)                                                                                                      aaTGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGAtt                                         <  1:129913/149‑1 (MQ=255)                                                                                                         ggCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAg                                      >  2:56528/1‑149 (MQ=255)                                                                                                          gCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGt                                     <  3:81662/149‑1 (MQ=255)                                                                                                            aGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGTTa                                   >  1:25700/1‑149 (MQ=255)                                                                                                            aGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGTTa                                   >  8:127194/1‑149 (MQ=255)                                                                                                                      aaaCAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGAt                                          >  2:129241/1‑132 (MQ=255)                                                                                                                      aaaCAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGAt                                          <  1:129241/132‑1 (MQ=255)                                                                                                                        aCAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGTTACTCGTTTTTGCt                       <  2:161032/149‑1 (MQ=255)                                                                                                                         cAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGTTACTCGTTTTTGCTg                      >  8:100732/1‑149 (MQ=255)                                                                                                                                 ccGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGTTACTCGTTTTTGCTGGTGTCAGa              <  6:124701/149‑1 (MQ=255)                                                                                                                                       cgTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGTTACTCGTTTTTGCTGGTGTCAGACTTtat        <  1:4920/149‑1 (MQ=255)                                                                                                                                             tGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGTTACTCGTTTTTGCTGGTGTCAGACTTTATATGccc  >  6:31601/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                             TATACTGGATTCACTTCTTGCCTTTAGCGCCTATTTTTTTATTGGCGTGGCTATGGTGATTATTTTTCTGTTTATCTATTCTAAAATTACACCGCACAACGAATGGCAGTTAATCAAAAACAATAATACCGCGGCGTCACTGGCGTTCAGCGGTACATTGTTGGGTTACGTTATCCCCTTATCCAGTGCGGCAATCAATGCGGTGAGTATTCCAGACTATTTCGCCTGGGGCGGGATTGCACTGGTGATTCAGTTACTCGTTTTTGCTGGTGTCAGACTTTATATGCCC  >  NC_000913/4411984‑4412272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.