New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2487477 =	34 (1.150)	4 (0.140)	4/252	2.9	10.8%	coding (3104/3594 nt)	evgS	hybrid sensory histidine kinase in two‑component regulatory system with EvgA
	?	NC_000913	2487488 =	33 (1.150)					coding (3115/3594 nt)	evgS	hybrid sensory histidine kinase in two‑component regulatory system with EvgA
Rejected: Frequency below/above cutoff threshold.

GGCGATACTGAGGTGCAATATGCGCAACTTGGTGTAACTGACTTAAATGTGTTTTCAGTACATCCAGGGTCAACGGTTTGAACAAACATAAGTTCATGCCGCAACTTAACCCTTTTTCACGTTCGTTAGCCTGTGCGTTGGCTGTAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2487626‑2487477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccAACGCACAGGCTAACGAACGTGAAAAAGGGTTAAGTTGCGGCATGAACTTATGTTTGTTCAAACCGTTGACCCTG  >  NC_000913/2487488‑2487562                                                                                                                                                                                                                                   GGCGATACTGAGGTGCAATATGCGCAACTTGGTGTAACTGACTTAAATGTGTTTTCAGTACATCCAGGGTCAACGGTTTGAACAAACATAAGTTCATGCCGCAACTTAACCCTTTTTCACGTTCGTTAGCCTGTGCGTTGGCTGTAAGC                                                                              >  6:9814/1‑149                                                              ATCCAGGGTCAACGGTTTGAACAAACATAAGTTCATGCCGCAACTTAACCCTTTTTCACGTTCGTTAGCCTGTGCGTTGGCTGTAAGCCAACGCACAGGCTAACGAGCGTGAAAAAGGG                                               >  1:153719/1‑119                                                              ATCCAGGGTCAACGGTTTGAACAAACATAAGTTCATGCCGCAACTTAACCCTTTTTCACGTTCGTTAGCCTGTGCGTTGGCTGTAAGCCAACGCACAGGCTAACGAGCGTGAAAAAGGG                                               <  2:153719/119‑1                                                                                            GTTCATGCCGCAACTTAACCCTTTTTCACGTTCGTTAGCCTGTGCGTTGGCTGTAAGCCAACGCACAGGCTAACGAACGTGAAAAAGGGTTAAGTTGCGGCATGAACTTATGTTTGTTCAAACCGTTGACCCTG  <  3:115403/134‑1                                                                                            GTTCATGCCGCAACTTAACCCTTTTTCACGTTCGTTAGCCTGTGCGTTGGCTGTAAGCCAACGCACAGGCTAACGAACGTGAAAAAGGGTTAAGTTGCGGCATGAACTTATGTTTGTTCAAACCGTTGACCCTG  >  4:115403/1‑134                                                                                                                                                     CCAACGCACAGGCTAACGAACGTGAAAAAGGGTTAAGTTGCGGCATGAAC                             <  1:24648/50‑1                                                                                                                                                     CCAACGCACAGGCTAACGAACGTGAAAAAGGGTTAAGTTGCGGCATGAAC                             >  2:24648/1‑50                                                                                                                                                                                                                                   GGCGATACTGAGGTGCAATATGCGCAACTTGGTGTAACTGACTTAAATGTGTTTTCAGTACATCCAGGGTCAACGGTTTGAACAAACATAAGTTCATGCCGCAACTTAACCCTTTTTCACGTTCGTTAGCCTGTGCGTTGGCTGTAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2487626‑2487477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccAACGCACAGGCTAACGAACGTGAAAAAGGGTTAAGTTGCGGCATGAACTTATGTTTGTTCAAACCGTTGACCCTG  >  NC_000913/2487488‑2487562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.