| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2331370 | 33 (1.120) | 4 (0.140) | 4/246 | 2.9 | 10.9% | pseudogene (3033/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | NC_000913 | = 2331375 | 34 (1.220) | pseudogene (3028/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTTCACTACTTTGTAGCCGGATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTG > NC_000913/2331254‑2331515 | gTTTCACTACTTTGTAGCCGGATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAActgtcttttgtggataacagctggcccgttg > 2:85441‑M1/1‑117 (MQ=255) tttCACTACTTTGTAGCCGGATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGttttg < 4:124095‑M2/126‑6 (MQ=255) tttCACTACTTTGTAGCCGGATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGttttg > 3:124095‑M2/1‑121 (MQ=255) tttCACTACTTTGTAGCCGGATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGACCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGc > 4:79581/1‑149 (MQ=255) tactTTGTAGCCGGATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCAttt > 5:65435/1‑149 (MQ=255) aGCCGGATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAActgtcttttgtggataacagctggcccgttgaacagcagaaaaatgt < 1:85441‑M1/149‑48 (MQ=255) ggATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCt > 5:17511/1‑149 (MQ=255) gATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGttttgtg < 4:28313‑M2/109‑8 (MQ=255) gATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGttttgtg > 3:28313‑M2/1‑102 (MQ=255) ttGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCAc < 6:17511/148‑1 (MQ=255) ttGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGACCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCAc < 3:79581/148‑1 (MQ=255) gCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACtt > 8:9486/1‑148 (MQ=255) gCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACtt > 5:22276/1‑148 (MQ=255) tCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTaa > 5:131783/1‑148 (MQ=255) cTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCAc > 1:163139/1‑114 (MQ=255) cTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCAc < 2:163139/114‑1 (MQ=255) cAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCt < 7:9486/149‑1 (MQ=255) aCATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTg > 2:68486/1‑148 (MQ=255) tCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGttttgt < 3:12188‑M2/82‑7 (MQ=255) tCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGttttgt > 4:12188‑M2/1‑76 (MQ=255) tCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTttgttg < 6:16522/115‑1 (MQ=255) tCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTttgttg > 5:16522/1‑115 (MQ=255) caccGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAActgtcttttgtggataac > 7:116965‑M1/1‑53 (MQ=255) caccGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAActgtcttttgtggataac < 8:116965‑M1/71‑19 (MQ=255) aTGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGc < 6:65435/149‑1 (MQ=255) aCATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtggtggcgataacgcgctgatgttgcccgagcaggcgagcaatatccggct < 1:85441‑M2/149‑103 (MQ=255) aTTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCtt > 6:68935/1‑149 (MQ=255) tttttCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCttt < 5:68935/149‑1 (MQ=255) ttttCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTtg > 5:44935/1‑149 (MQ=255) tttCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTtg < 6:22276/148‑1 (MQ=255) ttCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTtgt < 1:68486/148‑1 (MQ=255) ctgTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGcagc < 6:118617/148‑1 (MQ=255) ttCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGcagcgtca < 6:44935/149‑1 (MQ=255) ttCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGcagcgt < 6:131783/147‑1 (MQ=255) cAACGGGCCAGCTGTTATCCACAAAAGACAGttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtggtggcgataacgcgctgatgttgcccgagcaggcgagcaatatccggctacaaagtagtgaaac > 2:85441‑M2/1‑31 (MQ=255) aaCGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGcagcgtcagcg > 5:54013/1‑149 (MQ=255) aaCGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGcagcgtcagc > 1:35004/1‑148 (MQ=255) aaCGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGcagcgtcagc < 2:35004/148‑1 (MQ=255) gCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGaaa < 4:124207/110‑1 (MQ=255) tGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCAtc > 5:13266/1‑149 (MQ=255) gTTATCCACAAAAGACAGttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtg < 8:116965‑M2/71‑54 (MQ=255) gTTATCCACAAAAGACAGttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtg > 7:116965‑M2/1‑18 (MQ=255) tATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCAtct > 1:113/1‑147 (MQ=255) ccACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAAtt < 5:51713/109‑1 (MQ=255) ccACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAAtt > 6:51713/1‑109 (MQ=255) cacaAAActgtcttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtggtggcgataacgcgctgatgttgcccgagcaggcgagcaatatc < 4:28313‑M1/109‑103 (MQ=255) cacaAAActgtcttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtggtggcgataacgcgctgatgttgcccgagcaggcgagcaatatc > 3:28313‑M1/1‑7 (MQ=255) acaAAActgtcttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtggtggcgataacgcgctga > 4:12188‑M1/1‑6 (MQ=255) acaAAActgtcttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtggtggcgataacgcgctga < 3:12188‑M1/82‑77 (MQ=255) caAAActgtcttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtggtggcgataacgcgctgatgttgcccgagcaggcgagcaatatccggctacaaagtagtgaaa < 4:124095‑M1/126‑122 (MQ=255) caAAActgtcttttgtggataacagctggcccgttgaacagcagaaaaatgtcatgctcggtggtggcgataacgcgctgatgttgcccgagcaggcgagcaatatccggctacaaagtagtgaaa > 3:124095‑M1/1‑5 (MQ=255) caAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCt > 2:31991/1‑132 (MQ=255) aaaaGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTg > 3:128880/1‑149 (MQ=255) | GTTTCACTACTTTGTAGCCGGATATTGCTCGCCTGCTCGGGCAACATCAGCGCGTTATCGCCACCACCGAGCATGACATTTTTCTGCTGTTCAACGGGCCAGCTGTTATCCACAAAAGACAGTTTTGTGCTAATGCTGTCCTGCACTTGCCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTG > NC_000913/2331254‑2331515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |