New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3299608	27 (0.920)	8 (0.290)	4/240	2.8	23.6%	coding (308/444 nt)	yhbP	UPF0306 family protein
	?	NC_000913	= 3299630	27 (0.990)					coding (286/444 nt)	yhbP	UPF0306 family protein

ACCGCGAGGCGTTACGCCTGCTCGGTGCCTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAATTAACGCTACCGTTTTCGGCTGACCGTTTACCGTTCCGGCAACCGCAGCCTGCGGCCCACTCATCTGC  >  NC_000913/3299461‑3299754                                                                                                                                                    |                                                                                                                                                   aCCGCGAGGCGTTACGCCTGCTCGGTGCCTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC                                                                                                                                                    >  3:9691‑M1/1‑148 (MQ=255)                  cTGCTCGGTGCCTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTa                                                                                                                                             >  2:112874/1‑138 (MQ=255)                      tCGGTGCCTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAg                                                                                                                              >  3:82540/1‑149 (MQ=255)                        ggTGCCTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGAt                                                                                                                                                 <  4:21985/128‑1 (MQ=255)                        ggTGCCTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGAt                                                                                                                                                 >  3:21985/1‑128 (MQ=255)                         gTGCCTGAGTCGCGTATCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGGCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACctcgcgcgcaaggcgtacaatcgtc                                                                                                                           <  7:48354‑M1/149‑26 (MQ=255)                         gTGCCTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACctcgcgcgcaaggcgtacaatcgtc                                                                                                                           <  7:50146‑M1/149‑26 (MQ=255)                             cTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGt                                                                                                                                              >  6:8926/1‑126 (MQ=255)                             cTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGt                                                                                                                                              <  5:8926/126‑1 (MQ=255)                                          ccAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACctcgcgcgcaaggcgtacaatcgtcgctttc                                                                                                                     >  7:40018‑M1/1‑107 (MQ=255)                                          ccAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACctcgcgcgcaaggcgtacaatcgtcgctttc                                                                                                                     <  8:40018‑M1/138‑32 (MQ=255)                                           cAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAg                                                                                                         >  6:68742/1‑149 (MQ=255)                                                 aTTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTcc                                                                                                           <  3:37806/141‑1 (MQ=255)                                                 aTTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTcc                                                                                                           >  4:37806/1‑141 (MQ=255)                                                 aTTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGc                                                                                                    <  6:70246/148‑1 (MQ=255)                                                 aTTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCg                                                                                                   <  4:9691/149‑1 (MQ=255)                                                  tttttttACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCgg                                                                                                  <  4:82540/149‑1 (MQ=255)                                                        tACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGgtcgctt                                                                                                                       <  6:78190‑M2/122‑8 (MQ=255)                                                         aCCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCa                                                                                            <  5:68742/148‑1 (MQ=255)                                                                               gTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCAc                                                                                           >  5:54751/1‑127 (MQ=255)                                                                               gTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCAc                                                                                           <  6:54751/127‑1 (MQ=255)                                                                                    tttGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGAtct                                                                                              <  2:100131/119‑1 (MQ=255)                                                                                    tttGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGAtct                                                                                              >  1:100131/1‑119 (MQ=255)                                                                                    tttGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCAc                                                                                           >  2:20050/1‑122 (MQ=255)                                                                                      tGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAATTAACGc                                                               >  6:52725/1‑148 (MQ=255)                                                                                          ttCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACctcgcgcgcaaggcgtacaatcgtcgctttc                                                                                                                     <  6:39677‑M1/90‑32 (MQ=255)                                                                                          ttCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACctcgcgcgcaaggcgtacaatcgtcgctttc                                                                                                                     >  5:39677‑M1/1‑59 (MQ=255)                                                                                          ttCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACctcgcgcgcaaggcgtacaatcgtcgctttc                                                                                                                     >  5:41747‑M1/1‑59 (MQ=255)                                                                                          ttCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACctcgcgcgcaaggcgtacaatcgtcgctttc                                                                                                                     <  6:41747‑M1/90‑32 (MQ=255)                                                                                                            ccACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAATTAACGCTACCGTTTTCGGCTGACCGTTTa                                        >  8:3606/1‑149 (MQ=255)                                                                                                             cacaCCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAATTAACGCTACCGTTTTCGGCTGACCGTTTAc                                       <  5:52725/149‑1 (MQ=255)                                                                                                              acacCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAAt                                                                     <  8:33167/118‑1 (MQ=255)                                                                                                              acacCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAAt                                                                     >  7:33167/1‑118 (MQ=255)                                                                                                                  cGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAATTAACGCTACCGTTTTCGGCTGACCGTTTACCGTTc                                  <  7:3606/149‑1 (MQ=255)                                                                                                                         gACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAATTAACGCTACCGTTTTCGGCTGACCGTTTACCGTTCCGGCAAc                           >  1:151788/1‑149 (MQ=255)                                                                                                                               aTTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAATTAACGCTACCGTTTTCGGCTGACCGTTTACCGTTCCGGCAACCGCAGc                     <  2:151788/149‑1 (MQ=255)                                                                                                                                   tGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAATTAACGCTACCGTTTTCGGCTGACCGTTTACCGTTCCGGCAACCGCAGCCTGc                 >  7:73584/1‑149 (MQ=255)                                                                                                                                            gAAAGCGACGATTGTACGCCTTGCGCGCGAGgtcgctttccggttgccagaatgctgtcggccccggtgtgggaaatccggctcgatgaaatcaaattcaccgacaacacgctgggctttggtaaaaaaatgatttgg                   <  8:40018‑M2/138‑108 (MQ=255)                                                                                                                                            gAAAGCGACGATTGTACGCCTTGCGCGCGAGgtcgctttccggttgccagaatgctgtcggccccggtgtgggaaatccggctcgatgaaatcaaattcaccgacaacacgctgggctttggtaaaaaaatgatttgg                   >  7:40018‑M2/1‑31 (MQ=255)                                                                                                                                            gAAAGCGACGATTGTACGCCTTGCGCGCGAGgtcgctttccggttgccagaatgctgtcggccccggtgtgggaaatccggctcgatgaa                                                                   <  6:41747‑M2/90‑60 (MQ=255)                                                                                                                                            gAAAGCGACGATTGTACGCCTTGCGCGCGAGgtcgctttccggttgccagaatgctgtcggccccggtgtgggaaatccggctcgatgaa                                                                   <  6:39677‑M2/90‑60 (MQ=255)                                                                                                                                            gAAAGCGACGATTGTACGCCTTGCGCGCGAGgtcgctttccggttgccagaatgctgtcggccccggtgtgggaaatccggctcgatgaa                                                                   >  5:41747‑M2/1‑31 (MQ=255)                                                                                                                                            gAAAGCGACGATTGTACGCCTTGCGCGCGAGgtcgctttccggttgccagaatgctgtcggccccggtgtgggaaatccggctcgatgaa                                                                   >  5:39677‑M2/1‑31 (MQ=255)                                                                                                                                              aaGCGACctcgcgcgcaaggcgtacaatcgtcgctttccggttgccagaatgctgtcggccccggtgtgggaaatccggctcgatgaaatcaaattcaccgacaacacgctgggctttggta                                 <  6:78190‑M1/122‑116 (MQ=255)                                                                                                                                                  gacgaTTGTACGCCTTGCGCGCGAGgtcgctttccggttgccagaatgctgtcggccccggtgtgggaaatccggctcgatgaaatcaaattcaccgccaacacgctgggctttggtaaaaaaatgatttggatacgcgactcaggcac  <  7:48354‑M2/149‑125 (MQ=255)                                                                                                                                                  gacgaTTGTACGCCTTGCGCGCGAGgtcgctttccggttgccagaatgctgtcggccccggtgtgggaaatccggctcgatgaaatcaaattcaccgacaacacgctgggctttggtaaaaaaatgatttggctacgcgactcaggcac  <  7:50146‑M2/149‑125 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ACCGCGAGGCGTTACGCCTGCTCGGTGCCTGAGTCGCGTAGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACGATTGTACGCCTTGCGCGCGAGGTCGCTTTCCTCACCTTCCAGCCTGCGGATCTCACCTTTAAACTGCACACCGCGAATTAACGCTACCGTTTTCGGCTGACCGTTTACCGTTCCGGCAACCGCAGCCTGCGGCCCACTCATCTGC  >  NC_000913/3299461‑3299754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.