| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 9 (0.310) | 7/260 | 2.2 | 33.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3934365 | 18 (0.610) | coding (588/1506 nt) | rbsA | D‑ribose ABC transporter ATPase | |||||
GTTGAAATCGCCAAAGTGCTGAGCTTTGAGTCGAAAGTCATCATTATGGATGAACCGACCGATGCGCTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCGAAGATTCGCTGATTGAGATGATGGTGGGTCGCAAGCTGGAAGATC > NC_000913/3934225‑3934510 | gTTGAAATCGCCAAAGTGCTGAGCTTTGAGTCGAAAGTCATCATTATGGATGAACCGACCGATGCGCTGACCGATACCGAACCCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCa > 5:149549/1‑149 (MQ=255) gCCAAAGTGCTGAGCTTTGAGTCGAAAGTCATCATTATGGATGAACCGACCGATGCGCTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATgaa < 4:85731/149‑1 (MQ=255) aatggcgaagaaacggtctaaattggctgattcaaggcatttacgggagaaaatatcggctcatacatgaagaaatgaaatgactgagtcagccgagaagaatttcgccgcttattcgcaccttccCTATATCTCCCACCGCATgaaa < 7:85359‑M2/22‑1 (MQ=255) atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATATCTCCCACCGCATg < 8:100762‑M2/19‑1 (MQ=255) atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATATCTCCCACCGCATg > 7:100762‑M2/126‑144 (MQ=255) tCGAAAGTCATCATTATGGATGAACCGACCGATGCGCTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGa > 6:113014/1‑149 (MQ=255) atcatTATGGATGAACCGACCGATGCGCTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATggaaggtgcgaacaagtcactgatatgagatcatgtttgtcatctg < 4:33608‑M2/148‑47 (MQ=255) atTATGGATGAACCGACCGATGCGCTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGt > 1:119211/1‑149 (MQ=255) aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGAGGTTACCGttt > 7:107720‑M2/94‑149 (MQ=255) aaCCGACCGATGCGCTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGa < 2:119211/148‑1 (MQ=255) aaCCGACCGATGCGCTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGAt < 5:113014/149‑1 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGc > 6:1270‑M2/81‑120 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGc < 5:1270‑M2/40‑1 (MQ=255) gcTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCtat > 2:94421/1‑76 (MQ=255) gcTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCtat < 1:94421/76‑1 (MQ=255) atcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGATGTTACCGTTTTTCGTGATGGGCAATTTATTg < 8:107720‑M2/77‑1 (MQ=255) ccGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat < 5:82504‑M2/124‑54 (MQ=255) ccGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 6:82504‑M2/1‑71 (MQ=255) gATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCt > 1:117059/1‑144 (MQ=255) gATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCt < 2:117059/144‑1 (MQ=255) cgaaaccgaaTCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAg > 1:109702/1‑149 (MQ=255) ccTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatataacagggttcatcatgagtcatcaacttaccttcgccgaca > 3:33608‑M2/1‑52 (MQ=255) cTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGAc < 6:149549/149‑1 (MQ=255) ttCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGa < 1:136162/145‑1 (MQ=255) ttCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGa > 2:136162/1‑145 (MQ=255) ttCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCg > 7:7435/1‑148 (MQ=255) agccgagaagaatttccccgcttattcgcaccttccCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCGAAGATTCGc > 2:145471‑M2/37‑149 (MQ=255) aTCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCGAAGATTCGc < 8:7435/148‑1 (MQ=255) gAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCGAAGATTCGCTGATTga < 2:109702/149‑1 (MQ=255) ccccgcttattcgcaccttccCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCGAAGATTCGCTGATTGAGatgatg < 1:145471‑M2/127‑1 (MQ=255) aGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGaa > 1:81047/1‑103 (MQ=255) aGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGaa < 2:81047/103‑1 (MQ=255) gCCGCGGTATTGTCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa < 7:126692‑M2/146‑130 (MQ=255) attcgcaccttccCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCGAAGATTCGCTGa < 3:113967‑M2/116‑1 (MQ=255) attcgcaccttccCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCGAAGATTCGCTGa > 4:113967‑M2/14‑129 (MQ=255) ttGTCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca < 6:70258‑M2/104‑97 (MQ=255) ttGTCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca > 5:70258‑M2/1‑8 (MQ=255) tCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggggccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt < 7:47827‑M2/149‑145 (MQ=255) tataTCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCTTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCGAAGATTCGCTGATTGAGATGATGGTGGGTCGCAAGCTGGAAGATc > 1:83393/1‑148 (MQ=255) tggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggtgccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc > 8:47827‑M2/1‑1 (MQ=255) | GTTGAAATCGCCAAAGTGCTGAGCTTTGAGTCGAAAGTCATCATTATGGATGAACCGACCGATGCGCTGACCGATACCGAAACCGAATCCCTGTTCCGCGTCATCCGCGAGCTGAAATCGCAAGGCCGCGGTATTGTCTATATCTCCCACCGCATGAAAGAAATCTTCGAGATTTGCGATGACGTTACCGTTTTTCGTGATGGGCAATTTATTGCTGAGCGCGAAGTGGCATCACTGACCGAAGATTCGCTGATTGAGATGATGGTGGGTCGCAAGCTGGAAGATC > NC_000913/3934225‑3934510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |